Package org.biojava.nbio.alignment

Enum Alignments.ProfileProfileAlignerType

java.lang.Object

java.lang.Enum<Alignments.ProfileProfileAlignerType>

org.biojava.nbio.alignment.Alignments.ProfileProfileAlignerType

All Implemented Interfaces:

Serializable, Comparable<Alignments.ProfileProfileAlignerType>

Enclosing class:

Alignments

public static enum Alignments.ProfileProfileAlignerType
extends Enum<Alignments.ProfileProfileAlignerType>

List of implemented profile-profile alignment routines.

Enum Constant Summary

Enum Constants

Enum Constant	Description
GLOBAL
GLOBAL_CONSENSUS
GLOBAL_LINEAR_SPACE
LOCAL
LOCAL_CONSENSUS
LOCAL_LINEAR_SPACE

Method Summary

Modifier and Type	Method	Description
static Alignments.ProfileProfileAlignerType	valueOf(String name)	Returns the enum constant of this type with the specified name.
static Alignments.ProfileProfileAlignerType[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

GLOBAL

public static final Alignments.ProfileProfileAlignerType GLOBAL

GLOBAL_LINEAR_SPACE

public static final Alignments.ProfileProfileAlignerType GLOBAL_LINEAR_SPACE

GLOBAL_CONSENSUS

public static final Alignments.ProfileProfileAlignerType GLOBAL_CONSENSUS

LOCAL

public static final Alignments.ProfileProfileAlignerType LOCAL

LOCAL_LINEAR_SPACE

public static final Alignments.ProfileProfileAlignerType LOCAL_LINEAR_SPACE

LOCAL_CONSENSUS

public static final Alignments.ProfileProfileAlignerType LOCAL_CONSENSUS

Method Detail

values

public static Alignments.ProfileProfileAlignerType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (Alignments.ProfileProfileAlignerType c : Alignments.ProfileProfileAlignerType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static Alignments.ProfileProfileAlignerType valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null