Uses of Interface
org.biojava.nbio.alignment.template.ProfileProfileAligner

Packages that use ProfileProfileAligner

Package	Description
org.biojava.nbio.alignment
org.biojava.nbio.alignment.template

Uses of ProfileProfileAligner in org.biojava.nbio.alignment

Classes in org.biojava.nbio.alignment that implement ProfileProfileAligner

Modifier and Type	Class	Description
class	SimpleProfileProfileAligner<S extends Sequence<C>,C extends Compound>	Implements a simple (naive) Aligner for a pair of Profiles.

Uses of ProfileProfileAligner in org.biojava.nbio.alignment.template

Classes in org.biojava.nbio.alignment.template that implement ProfileProfileAligner

Modifier and Type	Class	Description
class	AbstractProfileProfileAligner<S extends Sequence<C>,C extends Compound>	Implements common code for an Aligner for a pair of Profiles.

Constructors in org.biojava.nbio.alignment.template with parameters of type ProfileProfileAligner

Constructor	Description
CallableProfileProfileAligner(ProfileProfileAligner<S,C> ppa)	Creates a profile-profile alignment task for simplified parallel execution.