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- Type Parameters:
S
- eachSequence
in the pair of alignmentProfile
s is of type SC
- each element of anAlignedSequence
is aCompound
of type C
- All Superinterfaces:
Aligner<S,C>
,ProfileProfileScorer<S,C>
,Scorer
- All Known Implementing Classes:
AbstractProfileProfileAligner
,SimpleProfileProfileAligner
public interface ProfileProfileAligner<S extends Sequence<C>,C extends Compound> extends Aligner<S,C>, ProfileProfileScorer<S,C>
Defines anAligner
for a pair ofProfile
s.- Author:
- Mark Chapman
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description ProfilePair<S,C>
getPair()
Returns alignment profile pair.-
Methods inherited from interface org.biojava.nbio.alignment.template.Aligner
getComputationTime, getProfile
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Methods inherited from interface org.biojava.nbio.alignment.template.ProfileProfileScorer
getQuery, getTarget
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Methods inherited from interface org.biojava.nbio.alignment.template.Scorer
getDistance, getDistance, getMaxScore, getMinScore, getScore, getSimilarity, getSimilarity
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Method Detail
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getPair
ProfilePair<S,C> getPair()
Returns alignment profile pair.- Returns:
- alignment profile pair
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