Uses of Class
org.biojava.nbio.core.sequence.CDSSequence
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Packages that use CDSSequence Package Description org.biojava.nbio.core.sequence -
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Uses of CDSSequence in org.biojava.nbio.core.sequence
Methods in org.biojava.nbio.core.sequence that return CDSSequence Modifier and Type Method Description CDSSequence
TranscriptSequence. addCDS(AccessionID accession, int begin, int end, int phase)
Add a Coding Sequence region with phase to the transcript sequenceCDSSequence
TranscriptSequence. removeCDS(String accession)
Remove a CDS or coding sequence from the transcript sequenceMethods in org.biojava.nbio.core.sequence that return types with arguments of type CDSSequence Modifier and Type Method Description LinkedHashMap<String,CDSSequence>
TranscriptSequence. getCDSSequences()
Get the CDS sequences that have been added to the TranscriptSequencesMethods in org.biojava.nbio.core.sequence with parameters of type CDSSequence Modifier and Type Method Description int
CDSComparator. compare(CDSSequence o1, CDSSequence o2)
Used to sort two CDSSequences where Negative Strand makes it tough
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