Uses of Package
org.biojava.nbio.core.sequence.compound

Packages that use org.biojava.nbio.core.sequence.compound

Package	Description
org.biojava.nbio.aaproperties	Set of classes that responsible for providing APIs and Command Prompt access to generate some basic physico-chemical properties of protein sequences.
org.biojava.nbio.aaproperties.xml	Set of classes that handles the reading and writing of xml files.
org.biojava.nbio.core.alignment
org.biojava.nbio.core.alignment.matrices
org.biojava.nbio.core.sequence
org.biojava.nbio.core.sequence.compound
org.biojava.nbio.core.sequence.io
org.biojava.nbio.core.sequence.storage
org.biojava.nbio.core.sequence.template
org.biojava.nbio.core.sequence.transcription
org.biojava.nbio.core.sequence.views
org.biojava.nbio.genome.io.fastq	FASTQ and variants sequence format I/O.
org.biojava.nbio.structure.align.ce	Classes related to the implementation of the CE alignment algorithm, here called jCE.
org.biojava.nbio.structure.align.multiple.util
org.biojava.nbio.structure.cluster
org.biojava.nbio.structure.io	Input and Output of Structures

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.aaproperties

Class	Description
AminoAcidCompound	Used to describe an Amino Acid.

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.aaproperties.xml

Class	Description
AminoAcidCompound	Used to describe an Amino Acid.

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.core.alignment

Class	Description
AminoAcidCompound	Used to describe an Amino Acid.

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.core.alignment.matrices

Class	Description
AminoAcidCompound	Used to describe an Amino Acid.
NucleotideCompound

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.core.sequence

Class	Description
AminoAcidCompound	Used to describe an Amino Acid.
NucleotideCompound

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.core.sequence.compound

Class	Description
ABITracerCompoundSet
AmbiguityDNACompoundSet
AmbiguityDNARNAHybridCompoundSet	Ambiguity set for hybrid DNA/RNA sequences.
AmbiguityRNACompoundSet
AminoAcidCompound	Used to describe an Amino Acid.
AminoAcidCompoundSet	Set of proteinogenic amino acids.
DNACompoundSet
NucleotideCompound
RNACompoundSet

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.core.sequence.io

Class	Description
AminoAcidCompound	Used to describe an Amino Acid.
NucleotideCompound

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.core.sequence.storage

Class	Description
NucleotideCompound

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.core.sequence.template

Class	Description
NucleotideCompound

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.core.sequence.transcription

Class	Description
AminoAcidCompound	Used to describe an Amino Acid.
NucleotideCompound

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.core.sequence.views

Class	Description
NucleotideCompound

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.genome.io.fastq

Class	Description
NucleotideCompound

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.structure.align.ce

Class	Description
AminoAcidCompound	Used to describe an Amino Acid.

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.structure.align.multiple.util

Class	Description
AminoAcidCompound	Used to describe an Amino Acid.

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.structure.cluster

Class	Description
AminoAcidCompound	Used to describe an Amino Acid.

Classes in org.biojava.nbio.core.sequence.compound used by org.biojava.nbio.structure.io

Class	Description
AminoAcidCompound	Used to describe an Amino Acid.