Interface Edit<C extends Compound>
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- Type Parameters:
C
- The type of compound to edit
- All Known Implementing Classes:
Edit.AbstractEdit
,Edit.Delete
,Edit.Insert
,Edit.Substitute
public interface Edit<C extends Compound>
Interface for carrying out edit operations on a Sequence. The 3 major methods of Editing are supported- Insertion
- Deletion
- Substitution
- Author:
- ayates
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Nested Class Summary
Nested Classes Modifier and Type Interface Description static class
Edit.AbstractEdit<C extends Compound>
Abstract class which defines all edit operations as a call to discover what 5' and 3' ends of an editing Sequence should be joined together with a target Sequence.static class
Edit.Delete<C extends Compound>
Implementation which allows for the deletion of bases from a Sequencestatic class
Edit.Insert<C extends Compound>
Edit implementation which allows us to insert a base at any position in a Sequence.static class
Edit.Substitute<C extends Compound>
Allows for the substitution of bases into an existing Sequence.
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description Sequence<C>
edit(Sequence<C> sequence)
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