- java.lang.Object
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- org.biojava.nbio.core.sequence.io.GenbankWriter<S,C>
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public class GenbankWriter<S extends Sequence<?>,C extends Compound> extends Object
- Author:
- mckeee1
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Constructor Summary
Constructors Constructor Description GenbankWriter(OutputStream os, Collection<S> sequences, GenbankHeaderFormatInterface<S,C> headerFormat)
Use default line length of 60GenbankWriter(OutputStream os, Collection<S> sequences, GenbankHeaderFormatInterface<S,C> headerFormat, int lineLength)
Set custom lineLength
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
getLineLength()
void
process()
Allow an override of operating system line separator for programs that needs a specific CRLF or CR or LF optionvoid
setLineLength(int lineLength)
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Constructor Detail
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GenbankWriter
public GenbankWriter(OutputStream os, Collection<S> sequences, GenbankHeaderFormatInterface<S,C> headerFormat)
Use default line length of 60- Parameters:
os
-sequences
-headerFormat
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GenbankWriter
public GenbankWriter(OutputStream os, Collection<S> sequences, GenbankHeaderFormatInterface<S,C> headerFormat, int lineLength)
Set custom lineLength- Parameters:
os
-sequences
-headerFormat
-lineLength
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Method Detail
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process
public void process() throws Exception
Allow an override of operating system line separator for programs that needs a specific CRLF or CR or LF option- Parameters:
lineSeparator
-- Throws:
Exception
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getLineLength
public int getLineLength()
- Returns:
- the lineLength
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setLineLength
public void setLineLength(int lineLength)
- Parameters:
lineLength
- the lineLength to set
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