Uses of Class
org.biojava.nbio.structure.align.client.StructureName
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Packages that use StructureName Package Description org.biojava.nbio.structure.align.client This package deals with the server communication for auto-downloading pre-calculated alignments.org.biojava.nbio.structure.align.util org.biojava.nbio.structure.rcsb -
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Uses of StructureName in org.biojava.nbio.structure.align.client
Methods in org.biojava.nbio.structure.align.client with parameters of type StructureName Modifier and Type Method Description int
StructureName. compareTo(StructureName o)
Orders identifiers lexicographically by PDB ID and then full IdentifierConstructors in org.biojava.nbio.structure.align.client with parameters of type StructureName Constructor Description PdbPair(StructureName name1, StructureName name2)
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Uses of StructureName in org.biojava.nbio.structure.align.util
Methods in org.biojava.nbio.structure.align.util with parameters of type StructureName Modifier and Type Method Description Structure
AtomCache. getStructureForCathDomain(StructureName structureName)
Returns aStructure
corresponding to the CATH identifier supplied instructureName
, using the theCathDatabase
atCathFactory.getCathDatabase()
.Structure
AtomCache. getStructureForCathDomain(StructureName structureName, CathDatabase cathInstall)
Returns aStructure
corresponding to the CATH identifier supplied instructureName
, using the specifiedCathDatabase
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Uses of StructureName in org.biojava.nbio.structure.rcsb
Methods in org.biojava.nbio.structure.rcsb that return types with arguments of type StructureName Modifier and Type Method Description static SortedSet<StructureName>
GetRepresentatives. getRepresentatives(int sequenceIdentity)
Returns a representative set of PDB protein chains at the specified sequence identity cutoff.
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