Class AlignmentCalcDB
- java.lang.Object
-
- org.biojava.nbio.structure.align.gui.AlignmentCalcDB
-
- All Implemented Interfaces:
Runnable
,AlignmentCalculationRunnable
public class AlignmentCalcDB extends Object implements AlignmentCalculationRunnable
-
-
Field Summary
Fields Modifier and Type Field Description static String
SCOP_VERSION
-
Constructor Summary
Constructors Constructor Description AlignmentCalcDB(AlignmentGui parent, Structure s1, String name1, UserConfiguration config, String outFile, Boolean domainSplit)
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
cleanup()
StructureAlignment
getAlgorithm()
void
interrupt()
stops what is currently happening and does not continueboolean
isInterrupted()
void
run()
void
setAlgorithm(StructureAlignment algo)
void
setNrCPUs(int useNrCPUs)
-
-
-
Field Detail
-
SCOP_VERSION
public static String SCOP_VERSION
-
-
Constructor Detail
-
AlignmentCalcDB
public AlignmentCalcDB(AlignmentGui parent, Structure s1, String name1, UserConfiguration config, String outFile, Boolean domainSplit)
-
-
Method Detail
-
getAlgorithm
public StructureAlignment getAlgorithm()
-
setAlgorithm
public void setAlgorithm(StructureAlignment algo)
-
interrupt
public void interrupt()
stops what is currently happening and does not continue- Specified by:
interrupt
in interfaceAlignmentCalculationRunnable
-
cleanup
public void cleanup()
- Specified by:
cleanup
in interfaceAlignmentCalculationRunnable
-
setNrCPUs
public void setNrCPUs(int useNrCPUs)
- Specified by:
setNrCPUs
in interfaceAlignmentCalculationRunnable
-
isInterrupted
public boolean isInterrupted()
-
-