| AboutDialog |
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| AlignmentCalc |
A class that obtains two structures via DAS and aligns them
This is done in a separate thread.
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| AlignmentCalcDB |
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| AlignmentGui |
A JFrame that allows to trigger a pairwise structure alignment,
either from files in a directory,
or after manual upload.
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| AlignmentTextPanel |
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| ChooseDirAction |
Ask the user to provide a directory containting PDB files.
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| ConfigPDBInstallPanel |
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| DBResultTable |
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| DBSearchGUI |
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| DisplayAFP |
A utility class for visualistion of structure alignments
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| DotPlotPanel |
Displays the dot plot trace for an alignment.
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| GUIAlignmentProgressListener |
a GUI that allows to watch progress as multiple alignments are being processed.
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| GUIFarmJobRunnable |
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| HelpDialog |
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| JPrintPanel |
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| MemoryMonitor |
Tracks Memory allocated & used, displayed in graph form.
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| MenuCreator |
Create the menus for structure alignment GUI windows (JFrames).
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| MenuCreator.DotPlotListener |
Creates a frame to display a DotPlotPanel.
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| MultipleAlignmentCalc |
A class that obtains structures via DAS and aligns them.
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| MultipleAlignmentGUI |
A JFrame that allows to trigger a multiple structure alignment,
either from files in a directory or after manual upload.
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| MultipleAlignmentJmolDisplay |
Utility Class that provides helper methods for the visualization of
MultipleAlignments. |
| MyAlignmentLoadListener |
Loads an alignment in an XML format and displays its content in a
new Jmol panel.
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| MyDistMaxListener |
Shows the interatomic Distance Matrices of all the Structures aligned in different Frames.
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| MyExportListener |
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| MyOpenPdbFileListener |
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| MySaveFileListener |
Save an alignment to a specified File by the user.
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| MyTableRowSorter |
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| ParameterGUI |
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| SelectPDBPanel |
A Panel that allows user to specify PDB & chain ID, as well as sub-ranges
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| ShowPDBIDListener |
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| StructureAlignmentDisplay |
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| StructureLoaderThread |
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| SystemInfo |
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