Interface Alignable
-
- All Known Implementing Classes:
StrCompAlignment
public interface Alignable
-
-
Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description AligMatEl[][]
getAligMat()
int
getCols()
float
getGapExtCol()
float
getGapExtRow()
float
getGapOpenCol()
float
getGapOpenRow()
IndexPair[]
getPath()
int
getPathSize()
int
getRows()
float
getScore()
void
setAligMat(AligMatEl[][] alignmentMatrix)
void
setGapExtCol(float penalty)
void
setGapExtRow(float penalty)
void
setGapOpenCol(float penalty)
void
setGapOpenRow(float penalty)
void
setPath(IndexPair[] path)
void
setPathSize(int pathSize)
void
setScore(float score)
-
-
-
Method Detail
-
getRows
int getRows()
-
getCols
int getCols()
-
getAligMat
AligMatEl[][] getAligMat()
-
setAligMat
void setAligMat(AligMatEl[][] alignmentMatrix)
-
getGapExtCol
float getGapExtCol()
-
setGapExtCol
void setGapExtCol(float penalty)
-
getGapExtRow
float getGapExtRow()
-
setGapExtRow
void setGapExtRow(float penalty)
-
getGapOpenCol
float getGapOpenCol()
-
setGapOpenCol
void setGapOpenCol(float penalty)
-
getGapOpenRow
float getGapOpenRow()
-
setGapOpenRow
void setGapOpenRow(float penalty)
-
setScore
void setScore(float score)
-
getScore
float getScore()
-
getPathSize
int getPathSize()
-
setPathSize
void setPathSize(int pathSize)
-
-