Package org.biojava.nbio.structure.align.pairwise

Classes for the pairwise alignment of structures.

Interface Summary

Interface	Description
Alignable

Class Summary

Class	Description
AlignmentProgressListener	A class to listen to progress of the structure alignment calculations
AlignmentResult	A class to track the alignment results in a flat file
AligNPE
AltAligComparator	a comparator to sort AlternativeAlignments based on their number of equivalent residues and RMSD.
AlternativeAlignment	Implements a class which handles one possible (alternative) solution.
FragmentJoiner	Joins the initial Fragments together to larger Fragments
FragmentPair	a pair of fragments of two protein structures
Gotoh	a class to perform Gotoh algorithm
StrCompAlignment