Class FragmentPair
- java.lang.Object
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- org.biojava.nbio.structure.align.pairwise.FragmentPair
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public class FragmentPair extends Object
a pair of fragments of two protein structures- Since:
- 1.5
- Version:
- %I% %G%
- Author:
- Andreas Prlic
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Constructor Summary
Constructors Constructor Description FragmentPair(int length, int p1, int p2)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description Object
clone()
Atom
getCenter1()
Atom
getCenter2()
int
getCluster()
int
getContacts()
int
getCovered()
int
getLength()
int
getPos1()
int
getPos2()
double
getRms()
Matrix
getRot()
Atom
getTrans()
Atom
getUnitv()
int
getUsed()
void
setCenter1(Atom center1)
void
setCenter2(Atom center2)
void
setCluster(int cluster)
void
setContacts(int contacts)
void
setCovered(int covered)
void
setLength(int length)
void
setPos1(int pos1)
void
setPos2(int pos2)
void
setRms(double rms)
void
setRot(Matrix rot)
void
setTrans(Atom trans)
void
setUnitv(Atom unitv)
void
setUsed(int used)
String
toString()
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Constructor Detail
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FragmentPair
public FragmentPair(int length, int p1, int p2)
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Method Detail
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getCluster
public int getCluster()
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setCluster
public void setCluster(int cluster)
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getContacts
public int getContacts()
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setContacts
public void setContacts(int contacts)
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getCovered
public int getCovered()
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setCovered
public void setCovered(int covered)
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getLength
public int getLength()
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setLength
public void setLength(int length)
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getPos1
public int getPos1()
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setPos1
public void setPos1(int pos1)
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getPos2
public int getPos2()
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setPos2
public void setPos2(int pos2)
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getRms
public double getRms()
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setRms
public void setRms(double rms)
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getUsed
public int getUsed()
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setUsed
public void setUsed(int used)
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getCenter1
public Atom getCenter1()
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setCenter1
public void setCenter1(Atom center1)
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getCenter2
public Atom getCenter2()
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setCenter2
public void setCenter2(Atom center2)
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