Enum SubunitClustererMethod
- java.lang.Object
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- java.lang.Enum<SubunitClustererMethod>
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- org.biojava.nbio.structure.cluster.SubunitClustererMethod
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- All Implemented Interfaces:
Serializable
,Comparable<SubunitClustererMethod>
public enum SubunitClustererMethod extends Enum<SubunitClustererMethod>
The SubunitClustererMethod ennummerates all methods that can be used to clusterSubunit
in theSubunitCluster
.- Since:
- 5.0.0
- Author:
- Aleix Lafita
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Enum Constant Summary
Enum Constants Enum Constant Description SEQUENCE
The SEQUENCE clustering method uses the residue sequence of theSubunit
to calculate sequence alignments.SEQUENCE_STRUCTURE
The SEQUENCE_STRUCTURE clustering method uses the residue sequence and the coordinates of its Atom representatives of theSubunit
to calculate sequence and structure alignments.STRUCTURE
The STRUCTURE clustering method uses the residue sequence and the coordinates of its Atom representatives of theSubunit
to calculate sequence and structure alignments.
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static SubunitClustererMethod
valueOf(String name)
Returns the enum constant of this type with the specified name.static SubunitClustererMethod[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Detail
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SEQUENCE
public static final SubunitClustererMethod SEQUENCE
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STRUCTURE
public static final SubunitClustererMethod STRUCTURE
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SEQUENCE_STRUCTURE
public static final SubunitClustererMethod SEQUENCE_STRUCTURE
The SEQUENCE_STRUCTURE clustering method uses the residue sequence and the coordinates of its Atom representatives of theSubunit
to calculate sequence and structure alignments.Two
Subunit
with sufficient sequence identity and coverage are clustered together. Additionally, twoSubunit
with sufficient structural similarity and coverage are clustered together. If the sequence and structure clustering differ, the cluster contains pseudosymmetry (by definition).
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Method Detail
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values
public static SubunitClustererMethod[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (SubunitClustererMethod c : SubunitClustererMethod.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
public static SubunitClustererMethod valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
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