Enum SubunitClustererMethod

    • Enum Constant Detail

      • SEQUENCE

        public static final SubunitClustererMethod SEQUENCE
        The SEQUENCE clustering method uses the residue sequence of the Subunit to calculate sequence alignments.

        Two Subunit with sufficient sequence identity and coverage are clustered together.

      • STRUCTURE

        public static final SubunitClustererMethod STRUCTURE
        The STRUCTURE clustering method uses the residue sequence and the coordinates of its Atom representatives of the Subunit to calculate sequence and structure alignments.

        Two Subunit with sufficient structural similarity and coverage are clustered together.

      • SEQUENCE_STRUCTURE

        public static final SubunitClustererMethod SEQUENCE_STRUCTURE
        The SEQUENCE_STRUCTURE clustering method uses the residue sequence and the coordinates of its Atom representatives of the Subunit to calculate sequence and structure alignments.

        Two Subunit with sufficient sequence identity and coverage are clustered together. Additionally, two Subunit with sufficient structural similarity and coverage are clustered together. If the sequence and structure clustering differ, the cluster contains pseudosymmetry (by definition).

    • Method Detail

      • values

        public static SubunitClustererMethod[] values()
        Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
        for (SubunitClustererMethod c : SubunitClustererMethod.values())
            System.out.println(c);
        
        Returns:
        an array containing the constants of this enum type, in the order they are declared
      • valueOf

        public static SubunitClustererMethod valueOf​(String name)
        Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
        Parameters:
        name - the name of the enum constant to be returned.
        Returns:
        the enum constant with the specified name
        Throws:
        IllegalArgumentException - if this enum type has no constant with the specified name
        NullPointerException - if the argument is null