Uses of Class
org.biojava.nbio.structure.io.FileParsingParameters

Packages that use FileParsingParameters

Package	Description
org.biojava.nbio.structure.align.util
org.biojava.nbio.structure.io	Input and Output of Structures
org.biojava.nbio.structure.io.mmcif	Input and Output of mmcif files.

Uses of FileParsingParameters in org.biojava.nbio.structure.align.util

Fields in org.biojava.nbio.structure.align.util declared as FileParsingParameters

Modifier and Type	Field	Description
protected FileParsingParameters	AtomCache.params

Methods in org.biojava.nbio.structure.align.util that return FileParsingParameters

Modifier and Type	Method	Description
FileParsingParameters	AtomCache.getFileParsingParams()

Methods in org.biojava.nbio.structure.align.util with parameters of type FileParsingParameters

Modifier and Type	Method	Description
void	AtomCache.setFileParsingParams(FileParsingParameters params)

Uses of FileParsingParameters in org.biojava.nbio.structure.io

Methods in org.biojava.nbio.structure.io that return FileParsingParameters

Modifier and Type	Method	Description
FileParsingParameters	LocalPDBDirectory.getFileParsingParameters()
FileParsingParameters	PDBFileParser.getFileParsingParameters()
FileParsingParameters	SandboxStyleStructureProvider.getFileParsingParameters()
FileParsingParameters	StructureProvider.getFileParsingParameters()	Get the parameters that should be used for file parsing

Methods in org.biojava.nbio.structure.io with parameters of type FileParsingParameters

Modifier and Type	Method	Description
void	LocalPDBDirectory.setFileParsingParameters(FileParsingParameters params)
void	PDBFileParser.setFileParsingParameters(FileParsingParameters params)
void	SandboxStyleStructureProvider.setFileParsingParameters(FileParsingParameters params)
void	StructureProvider.setFileParsingParameters(FileParsingParameters params)	Set the parameters that should be used for file parsing

Constructors in org.biojava.nbio.structure.io with parameters of type FileParsingParameters

Constructor	Description
BondMaker(Structure structure, FileParsingParameters params)

Uses of FileParsingParameters in org.biojava.nbio.structure.io.mmcif

Methods in org.biojava.nbio.structure.io.mmcif that return FileParsingParameters

Modifier and Type	Method	Description
FileParsingParameters	ChemCompConsumer.getFileParsingParameters()
FileParsingParameters	MetalBondConsumer.getFileParsingParameters()
FileParsingParameters	MMcifConsumer.getFileParsingParameters()
FileParsingParameters	SimpleMMcifConsumer.getFileParsingParameters()

Methods in org.biojava.nbio.structure.io.mmcif with parameters of type FileParsingParameters

Modifier and Type	Method	Description
void	ChemCompConsumer.setFileParsingParameters(FileParsingParameters params)
void	MetalBondConsumer.setFileParsingParameters(FileParsingParameters params)
void	MMcifConsumer.setFileParsingParameters(FileParsingParameters params)
void	SimpleMMcifConsumer.setFileParsingParameters(FileParsingParameters params)