Class EntitySrcGen
- java.lang.Object
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- org.biojava.nbio.structure.io.mmcif.model.EntitySrcGen
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public class EntitySrcGen extends Object
Data items in the ENTITY_SRC_GEN category record details of the source from which the entity was obtained in cases where the source was genetically manipulated. The following are treated separately: items pertaining to the tissue from which the gene was obtained, items pertaining to the host organism for gene expression and items pertaining to the actual producing organism (plasmid).- Author:
- Andreas Prlic
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Constructor Summary
Constructors Constructor Description EntitySrcGen()
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Method Summary
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Constructor Detail
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EntitySrcGen
public EntitySrcGen()
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Method Detail
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getEntity_id
public String getEntity_id()
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setEntity_id
public void setEntity_id(String entity_id)
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getExpression_system_id
public String getExpression_system_id()
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setExpression_system_id
public void setExpression_system_id(String expression_system_id)
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getGene_src_common_name
public String getGene_src_common_name()
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setGene_src_common_name
public void setGene_src_common_name(String gene_src_common_name)
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getGene_src_details
public String getGene_src_details()
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setGene_src_details
public void setGene_src_details(String gene_src_details)
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getGene_src_dev_stage
public String getGene_src_dev_stage()
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setGene_src_dev_stage
public void setGene_src_dev_stage(String gene_src_dev_stage)
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getGene_src_genus
public String getGene_src_genus()
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setGene_src_genus
public void setGene_src_genus(String gene_src_genus)
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getGene_src_species
public String getGene_src_species()
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setGene_src_species
public void setGene_src_species(String gene_src_species)
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getGene_src_strain
public String getGene_src_strain()
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setGene_src_strain
public void setGene_src_strain(String gene_src_strain)
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getGene_src_tissue
public String getGene_src_tissue()
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setGene_src_tissue
public void setGene_src_tissue(String gene_src_tissue)
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getGene_src_tissue_fraction
public String getGene_src_tissue_fraction()
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setGene_src_tissue_fraction
public void setGene_src_tissue_fraction(String gene_src_tissue_fraction)
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getHost_org_common_name
public String getHost_org_common_name()
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setHost_org_common_name
public void setHost_org_common_name(String host_org_common_name)
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getHost_org_details
public String getHost_org_details()
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setHost_org_details
public void setHost_org_details(String host_org_details)
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getHost_org_genus
public String getHost_org_genus()
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setHost_org_genus
public void setHost_org_genus(String host_org_genus)
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getHost_org_species
public String getHost_org_species()
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setHost_org_species
public void setHost_org_species(String host_org_species)
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getHost_org_strain
public String getHost_org_strain()
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setHost_org_strain
public void setHost_org_strain(String host_org_strain)
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getPdbx_src_id
public String getPdbx_src_id()
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setPdbx_src_id
public void setPdbx_src_id(String pdbx_src_id)
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getPdbx_seq_type
public String getPdbx_seq_type()
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setPdbx_seq_type
public void setPdbx_seq_type(String pdbx_seq_type)
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getPdbx_alt_source_flag
public String getPdbx_alt_source_flag()
- Returns:
- the pdbx_alt_source_flag
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setPdbx_alt_source_flag
public void setPdbx_alt_source_flag(String pdbx_alt_source_flag)
- Parameters:
pdbx_alt_source_flag
- the pdbx_alt_source_flag to set
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getPdbx_beg_seq_num
public String getPdbx_beg_seq_num()
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setPdbx_beg_seq_num
public void setPdbx_beg_seq_num(String pdbx_beg_seq_num)
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getPdbx_end_seq_num
public String getPdbx_end_seq_num()
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setPdbx_end_seq_num
public void setPdbx_end_seq_num(String pdbx_end_seq_num)
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getPdbx_description
public String getPdbx_description()
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setPdbx_description
public void setPdbx_description(String pdbx_description)
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getPdbx_gene_src_atcc
public String getPdbx_gene_src_atcc()
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setPdbx_gene_src_atcc
public void setPdbx_gene_src_atcc(String pdbx_gene_src_atcc)
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getPdbx_gene_src_cell
public String getPdbx_gene_src_cell()
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setPdbx_gene_src_cell
public void setPdbx_gene_src_cell(String pdbx_gene_src_cell)
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getPdbx_gene_src_cell_line
public String getPdbx_gene_src_cell_line()
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setPdbx_gene_src_cell_line
public void setPdbx_gene_src_cell_line(String pdbx_gene_src_cell_line)
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getPdbx_gene_src_cellular_location
public String getPdbx_gene_src_cellular_location()
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setPdbx_gene_src_cellular_location
public void setPdbx_gene_src_cellular_location(String pdbx_gene_src_cellular_location)
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getPdbx_gene_src_fragment
public String getPdbx_gene_src_fragment()
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setPdbx_gene_src_fragment
public void setPdbx_gene_src_fragment(String pdbx_gene_src_fragment)
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getPdbx_gene_src_gene
public String getPdbx_gene_src_gene()
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setPdbx_gene_src_gene
public void setPdbx_gene_src_gene(String pdbx_gene_src_gene)
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getPdbx_gene_src_ncbi_taxonomy_id
public String getPdbx_gene_src_ncbi_taxonomy_id()
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setPdbx_gene_src_ncbi_taxonomy_id
public void setPdbx_gene_src_ncbi_taxonomy_id(String pdbx_gene_src_ncbi_taxonomy_id)
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getPdbx_gene_src_organ
public String getPdbx_gene_src_organ()
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setPdbx_gene_src_organ
public void setPdbx_gene_src_organ(String pdbx_gene_src_organ)
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getPdbx_gene_src_organelle
public String getPdbx_gene_src_organelle()
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setPdbx_gene_src_organelle
public void setPdbx_gene_src_organelle(String pdbx_gene_src_organelle)
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getPdbx_gene_src_plasmid
public String getPdbx_gene_src_plasmid()
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setPdbx_gene_src_plasmid
public void setPdbx_gene_src_plasmid(String pdbx_gene_src_plasmid)
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getPdbx_gene_src_plasmid_name
public String getPdbx_gene_src_plasmid_name()
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setPdbx_gene_src_plasmid_name
public void setPdbx_gene_src_plasmid_name(String pdbx_gene_src_plasmid_name)
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getPdbx_gene_src_scientific_name
public String getPdbx_gene_src_scientific_name()
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setPdbx_gene_src_scientific_name
public void setPdbx_gene_src_scientific_name(String pdbx_gene_src_scientific_name)
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getPdbx_gene_src_variant
public String getPdbx_gene_src_variant()
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setPdbx_gene_src_variant
public void setPdbx_gene_src_variant(String pdbx_gene_src_variant)
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getPdbx_host_org_atcc
public String getPdbx_host_org_atcc()
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setPdbx_host_org_atcc
public void setPdbx_host_org_atcc(String pdbx_host_org_atcc)
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getPdbx_host_org_cell
public String getPdbx_host_org_cell()
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setPdbx_host_org_cell
public void setPdbx_host_org_cell(String pdbx_host_org_cell)
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getPdbx_host_org_cell_line
public String getPdbx_host_org_cell_line()
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setPdbx_host_org_cell_line
public void setPdbx_host_org_cell_line(String pdbx_host_org_cell_line)
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getPdbx_host_org_cellular_location
public String getPdbx_host_org_cellular_location()
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setPdbx_host_org_cellular_location
public void setPdbx_host_org_cellular_location(String pdbx_host_org_cellular_location)
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getPdbx_host_org_culture_collection
public String getPdbx_host_org_culture_collection()
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setPdbx_host_org_culture_collection
public void setPdbx_host_org_culture_collection(String pdbx_host_org_culture_collection)
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getPdbx_host_org_gene
public String getPdbx_host_org_gene()
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setPdbx_host_org_gene
public void setPdbx_host_org_gene(String pdbx_host_org_gene)
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getPdbx_host_org_ncbi_taxonomy_id
public String getPdbx_host_org_ncbi_taxonomy_id()
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setPdbx_host_org_ncbi_taxonomy_id
public void setPdbx_host_org_ncbi_taxonomy_id(String pdbx_host_org_ncbi_taxonomy_id)
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getPdbx_host_org_organ
public String getPdbx_host_org_organ()
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setPdbx_host_org_organ
public void setPdbx_host_org_organ(String pdbx_host_org_organ)
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getPdbx_host_org_organelle
public String getPdbx_host_org_organelle()
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setPdbx_host_org_organelle
public void setPdbx_host_org_organelle(String pdbx_host_org_organelle)
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getPdbx_host_org_scientific_name
public String getPdbx_host_org_scientific_name()
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setPdbx_host_org_scientific_name
public void setPdbx_host_org_scientific_name(String pdbx_host_org_scientific_name)
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getPdbx_host_org_strain
public String getPdbx_host_org_strain()
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setPdbx_host_org_strain
public void setPdbx_host_org_strain(String pdbx_host_org_strain)
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getPdbx_host_org_tissue
public String getPdbx_host_org_tissue()
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setPdbx_host_org_tissue
public void setPdbx_host_org_tissue(String pdbx_host_org_tissue)
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getPdbx_host_org_tissue_fraction
public String getPdbx_host_org_tissue_fraction()
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setPdbx_host_org_tissue_fraction
public void setPdbx_host_org_tissue_fraction(String pdbx_host_org_tissue_fraction)
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getPdbx_host_org_variant
public String getPdbx_host_org_variant()
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setPdbx_host_org_variant
public void setPdbx_host_org_variant(String pdbx_host_org_variant)
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getPdbx_host_org_vector
public String getPdbx_host_org_vector()
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setPdbx_host_org_vector
public void setPdbx_host_org_vector(String pdbx_host_org_vector)
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getPdbx_host_org_vector_type
public String getPdbx_host_org_vector_type()
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setPdbx_host_org_vector_type
public void setPdbx_host_org_vector_type(String pdbx_host_org_vector_type)
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getPlasmid_details
public String getPlasmid_details()
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setPlasmid_details
public void setPlasmid_details(String plasmid_details)
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getPlasmid_name
public String getPlasmid_name()
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setPlasmid_name
public void setPlasmid_name(String plasmid_name)
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getStart_construct_id
public String getStart_construct_id()
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setStart_construct_id
public void setStart_construct_id(String start_construct_id)
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