Uses of Class
org.biojava.nbio.structure.io.mmcif.model.AtomSite
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Packages that use AtomSite Package Description org.biojava.nbio.structure.io.mmcif Input and Output of mmcif files. -
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Uses of AtomSite in org.biojava.nbio.structure.io.mmcif
Methods in org.biojava.nbio.structure.io.mmcif that return AtomSite Modifier and Type Method Description static AtomSite
MMCIFFileTools. convertAtomToAtomSite(Atom a, int model, String chainName, String chainId)
Converts an Atom object to anAtomSite
object.static AtomSite
MMCIFFileTools. convertAtomToAtomSite(Atom a, int model, String chainName, String chainId, int atomId)
Converts an Atom object to anAtomSite
object.Methods in org.biojava.nbio.structure.io.mmcif that return types with arguments of type AtomSite Modifier and Type Method Description static List<AtomSite>
MMCIFFileTools. convertChainToAtomSites(Chain c, int model, String chainName, String chainId)
Converts a Chain into a List ofAtomSite
objectsstatic List<AtomSite>
MMCIFFileTools. convertGroupToAtomSites(Group g, int model, String chainName, String chainId)
Converts a Group into a List ofAtomSite
objects.static List<AtomSite>
MMCIFFileTools. convertStructureToAtomSites(Structure s)
Converts a Structure into a List ofAtomSite
objectsMethods in org.biojava.nbio.structure.io.mmcif with parameters of type AtomSite Modifier and Type Method Description void
ChemCompConsumer. newAtomSite(AtomSite atom)
void
MetalBondConsumer. newAtomSite(AtomSite atom)
void
MMcifConsumer. newAtomSite(AtomSite atom)
A new AtomSite record has been read.void
SimpleMMcifConsumer. newAtomSite(AtomSite atom)
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