Uses of Class
org.biojava.nbio.structure.io.mmcif.model.ChemComp
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Packages that use ChemComp Package Description org.biojava.nbio.structure org.biojava.nbio.structure.io.mmcif Input and Output of mmcif files.org.biojava.nbio.structure.io.mmcif.chem org.biojava.nbio.structure.io.mmcif.model Datamodel objects used for processing mmcif files. -
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Uses of ChemComp in org.biojava.nbio.structure
Fields in org.biojava.nbio.structure declared as ChemComp Modifier and Type Field Description protected ChemComp
HetatomImpl. chemComp
Methods in org.biojava.nbio.structure that return ChemComp Modifier and Type Method Description ChemComp
Group. getChemComp()
Get the chemical component that closer describes this group.ChemComp
HetatomImpl. getChemComp()
Methods in org.biojava.nbio.structure with parameters of type ChemComp Modifier and Type Method Description void
Group. setChemComp(ChemComp cc)
Set the Chemical Component that closer describes this group.void
HetatomImpl. setChemComp(ChemComp cc)
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Uses of ChemComp in org.biojava.nbio.structure.io.mmcif
Methods in org.biojava.nbio.structure.io.mmcif that return ChemComp Modifier and Type Method Description ChemComp
AllChemCompProvider. getChemComp(String recordName)
Returns a new instance of a chemical component definition.static ChemComp
ChemCompGroupFactory. getChemComp(String recordName)
ChemComp
ChemCompProvider. getChemComp(String recordName)
Returns a new instance of a chemical component definition.ChemComp
ChemicalComponentDictionary. getChemComp(String id)
ChemComp
DownloadChemCompProvider. getChemComp(String recordName)
Loads the definitions for thisChemComp
from a local file and instantiates a new object.ChemComp
ReducedChemCompProvider. getChemComp(String recordName)
ChemComp
ZipChemCompProvider. getChemComp(String recordName)
ChemComp
ChemicalComponentDictionary. getParent(ChemComp c)
Get the parent of a component.ChemComp
ChemicalComponentDictionary. getReplaced(String id)
ChemComp
ChemicalComponentDictionary. getReplaced(ChemComp c)
if ChemComp is replacing another one, get the old version otherwise return the same ChemComp again.ChemComp
ChemicalComponentDictionary. getReplacer(String id)
ChemComp
ChemicalComponentDictionary. getReplacer(ChemComp c)
if ChemComp is replaced by another one, get the newer version otherwise return the same ChemComp again.Methods in org.biojava.nbio.structure.io.mmcif with parameters of type ChemComp Modifier and Type Method Description void
ChemicalComponentDictionary. addChemComp(ChemComp comp)
add a new component to the dictionarystatic String
ChemCompGroupFactory. getOneLetterCode(ChemComp cc)
ChemComp
ChemicalComponentDictionary. getParent(ChemComp c)
Get the parent of a component.ChemComp
ChemicalComponentDictionary. getReplaced(ChemComp c)
if ChemComp is replacing another one, get the old version otherwise return the same ChemComp again.ChemComp
ChemicalComponentDictionary. getReplacer(ChemComp c)
if ChemComp is replaced by another one, get the newer version otherwise return the same ChemComp again.boolean
ChemicalComponentDictionary. isReplaced(ChemComp c)
boolean
ChemicalComponentDictionary. isReplacer(ChemComp c)
void
ChemCompConsumer. newChemComp(ChemComp c)
void
MetalBondConsumer. newChemComp(ChemComp c)
void
MMcifConsumer. newChemComp(ChemComp c)
void
SimpleMMcifConsumer. newChemComp(ChemComp c)
void
SimpleMMcifParser. triggerNewChemComp(ChemComp cc)
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Uses of ChemComp in org.biojava.nbio.structure.io.mmcif.chem
Methods in org.biojava.nbio.structure.io.mmcif.chem with parameters of type ChemComp Modifier and Type Method Description static Character
ChemCompTools. getOneLetterCode(ChemComp cc, ChemicalComponentDictionary dictionary)
static boolean
ChemCompTools. isStandardChemComp(ChemComp cc)
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Uses of ChemComp in org.biojava.nbio.structure.io.mmcif.model
Methods in org.biojava.nbio.structure.io.mmcif.model that return ChemComp Modifier and Type Method Description static ChemComp
ChemComp. getEmptyChemComp()
Creates a new instance of the dummy empty ChemComp.Methods in org.biojava.nbio.structure.io.mmcif.model with parameters of type ChemComp Modifier and Type Method Description int
ChemComp. compareTo(ChemComp arg0)
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