Class RotationGroup
- java.lang.Object
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- org.biojava.nbio.structure.symmetry.core.RotationGroup
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Constructor Summary
Constructors Constructor Description RotationGroup()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
addRotation(Rotation rotation)
void
complete()
int
getHigherOrderRotationAxis()
int
getOrder()
String
getPointGroup()
int
getPrincipalAxisIndex()
Rotation
getRotation(int index)
QuatSymmetryScores
getScores()
Returns QuatSymmetryScores averaged over all rotations (except the first rotation, which is the unit operation E)int
getTwoFoldsPerpendicular()
boolean
isComplete()
Iterator<Rotation>
iterator()
void
removeRotation(int index)
void
setC1(int n)
void
setSymmetryDeviation(double symmetryDeviation)
void
sortByFoldDecending()
String
toString()
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
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Methods inherited from interface java.lang.Iterable
forEach, spliterator
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Constructor Detail
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RotationGroup
public RotationGroup()
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Method Detail
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getOrder
public int getOrder()
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getRotation
public Rotation getRotation(int index)
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addRotation
public void addRotation(Rotation rotation)
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setC1
public void setC1(int n)
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removeRotation
public void removeRotation(int index)
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complete
public void complete()
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getPointGroup
public String getPointGroup()
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getScores
public QuatSymmetryScores getScores()
Returns QuatSymmetryScores averaged over all rotations (except the first rotation, which is the unit operation E)- Returns:
- mean scores average over rotations
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setSymmetryDeviation
public void setSymmetryDeviation(double symmetryDeviation)
- Parameters:
symmetryDeviation
- the symmetryDeviation to set
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isComplete
public boolean isComplete()
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getHigherOrderRotationAxis
public int getHigherOrderRotationAxis()
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getTwoFoldsPerpendicular
public int getTwoFoldsPerpendicular()
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getPrincipalAxisIndex
public int getPrincipalAxisIndex()
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sortByFoldDecending
public void sortByFoldDecending()
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