Uses of Class
org.biojava.nbio.structure.symmetry.core.QuatSymmetrySubunits

Packages that use QuatSymmetrySubunits

Package	Description
org.biojava.nbio.structure.symmetry.axis
org.biojava.nbio.structure.symmetry.core

Uses of QuatSymmetrySubunits in org.biojava.nbio.structure.symmetry.axis

Methods in org.biojava.nbio.structure.symmetry.axis that return QuatSymmetrySubunits

Modifier and Type	Method	Description
abstract QuatSymmetrySubunits	AxisAligner.getSubunits()
QuatSymmetrySubunits	HelixAxisAligner.getSubunits()
QuatSymmetrySubunits	RotationAxisAligner.getSubunits()

Uses of QuatSymmetrySubunits in org.biojava.nbio.structure.symmetry.core

Methods in org.biojava.nbio.structure.symmetry.core with parameters of type QuatSymmetrySubunits

Modifier and Type	Method	Description
static QuatSymmetryScores	QuatSuperpositionScorer.calcScores(QuatSymmetrySubunits subunits, javax.vecmath.Matrix4d transformation, List<Integer> permutation)	Returns minimum, mean, and maximum RMSD and TM-Score for two superimposed sets of subunits TM score: Yang Zhang and Jeffrey Skolnick, PROTEINS: Structure, Function, and Bioinformatics 57:702–710 (2004)

Constructors in org.biojava.nbio.structure.symmetry.core with parameters of type QuatSymmetrySubunits

Constructor	Description
C2RotationSolver(QuatSymmetrySubunits subunits, QuatSymmetryParameters parameters)
HelicalRepeatUnit(QuatSymmetrySubunits subunits)
HelixExtender(QuatSymmetrySubunits subunits, Helix helix)
HelixSolver(QuatSymmetrySubunits subunits, int fold, QuatSymmetryParameters parameters)
RotationSolver(QuatSymmetrySubunits subunits, QuatSymmetryParameters parameters)
SystematicSolver(QuatSymmetrySubunits subunits, QuatSymmetryParameters parameters)