GraphComponentOrderDetector (biojava 5.2.0 API)

java.lang.Object
- org.biojava.nbio.structure.symmetry.internal.GraphComponentOrderDetector

All Implemented Interfaces:

OrderDetector
```
public class GraphComponentOrderDetector
extends Object
implements OrderDetector
```
The GraphOrderDetector transforms the self-alignment into a Graph and extracts its maximally connected Components.
The order reported is the one that maximizes the number of residues aligned, i.e. the highest order (component size) times the frequency of the Component.

Since:

4.2.0

Author:

Aleix Lafita

- Constructor Summary
  
  Constructors
  Constructor Description
  
  GraphComponentOrderDetector()
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  int calculateOrder(AFPChain selfAlignment, Atom[] ca)
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- GraphComponentOrderDetector
```
public GraphComponentOrderDetector()
```

Method Detail

calculateOrder

public int calculateOrder(AFPChain selfAlignment,
                          Atom[] ca)
                   throws RefinerFailedException

Specified by:: calculateOrder in interface OrderDetector
Throws:: RefinerFailedException