| AngleOrderDetectorPlus |
Guesses an order of rotational symmetry from the angle.
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| CeSymm |
Identify the symmetries in a structure by running an alignment of the
structure against itself disabling the diagonal of the identity alignment.
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| CeSymmIterative |
Iterative version of CeSymm that aims at identifying all symmetry axis of a
structure.
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| CESymmParameters |
Provides parameters to CeSymm. |
| CeSymmResult |
This Class stores all the relevant information of an internal symmetry result
obtained with CeSymm.
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| GraphComponentOrderDetector |
The GraphOrderDetector transforms the self-alignment into a Graph and
extracts its maximally connected Components.
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| GraphComponentRefiner |
The GraphRefiner transforms the self-alignment into a Graph and extracts its
maximally connected Components.
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| ResidueGroup |
A ResidueGroup is a set of residues that are part of a maximally connected
component of the self-Alignment Graph in symmetry analysis.
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| SequenceFunctionOrderDetector |
Calls Spencer's method for determining order.
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| SequenceFunctionRefiner |
Creates a refined alignment with the CE-Symm alternative self-alignment.
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| SymmetryAxes |
Data Structure that stores all the symmetry axis that describe
the symmetry of a structure.
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| SymmetryAxes.Axis |
Represents an axis of symmetry
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| SymmOptimizer |
Optimizes a symmetry alignment by a Monte Carlo score optimization of the
repeat multiple alignment.
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