Class SequenceFunctionOrderDetector
- java.lang.Object
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- org.biojava.nbio.structure.symmetry.internal.SequenceFunctionOrderDetector
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- All Implemented Interfaces:
OrderDetector
public class SequenceFunctionOrderDetector extends Object implements OrderDetector
Calls Spencer's method for determining order. This method uses the sequence alignment information to guess the order of symmetry.- Since:
- 4.2.0
- Author:
- dmyersturnbull
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Constructor Summary
Constructors Constructor Description SequenceFunctionOrderDetector()
SequenceFunctionOrderDetector(int maxSymmetry, float minimumMetricChange)
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Constructor Detail
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SequenceFunctionOrderDetector
public SequenceFunctionOrderDetector()
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SequenceFunctionOrderDetector
public SequenceFunctionOrderDetector(int maxSymmetry, float minimumMetricChange)
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Method Detail
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calculateOrder
public int calculateOrder(AFPChain afpChain, Atom[] ca) throws RefinerFailedException
- Specified by:
calculateOrder
in interfaceOrderDetector
- Throws:
RefinerFailedException
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