Uses of Class
org.biojava.nbio.structure.symmetry.internal.CESymmParameters
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Packages that use CESymmParameters Package Description org.biojava.nbio.structure.symmetry.gui org.biojava.nbio.structure.symmetry.internal -
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Uses of CESymmParameters in org.biojava.nbio.structure.symmetry.gui
Methods in org.biojava.nbio.structure.symmetry.gui that return CESymmParameters Modifier and Type Method Description CESymmParameters
SymmetryGui. getParameters()
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Uses of CESymmParameters in org.biojava.nbio.structure.symmetry.internal
Methods in org.biojava.nbio.structure.symmetry.internal that return CESymmParameters Modifier and Type Method Description CESymmParameters
CESymmParameters. clone()
CESymmParameters
CeSymmResult. getParams()
Methods in org.biojava.nbio.structure.symmetry.internal with parameters of type CESymmParameters Modifier and Type Method Description protected static CeSymmResult
CeSymm. align(Atom[] atoms, CESymmParameters params)
static CeSymmResult
CeSymm. analyze(Atom[] atoms, CESymmParameters params)
Analyze the symmetries of the input Atom array using the provided parameters.static CeSymmResult
CeSymm. analyzeLevel(Atom[] atoms, CESymmParameters params)
Analyze a single level of symmetry.void
CeSymmResult. setParams(CESymmParameters params)
Constructors in org.biojava.nbio.structure.symmetry.internal with parameters of type CESymmParameters Constructor Description CeSymmIterative(CESymmParameters param)
For the iterative algorithm to work properly the refinement and optimization options should be turned on, because the alignment has to be consistent at every recursive step.CESymmParameters(CESymmParameters o)
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