org.biojava.nbio.core.alignment.matrices

Class AAIndexFileParser

java.lang.Object

org.biojava.nbio.core.alignment.matrices.AAIndexFileParser

public class AAIndexFileParser
extends Object

Constructor Summary

Constructors

Constructor and Description
AAIndexFileParser()

Method Summary

Modifier and Type	Method and Description
Map<String,SubstitutionMatrix<AminoAcidCompound>>	getMatrices()
void	parse(InputStream inputStream) parse an inputStream that points to an AAINDEX database file

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AAIndexFileParser

public AAIndexFileParser()

Method Detail

parse

public void parse(InputStream inputStream)
           throws IOException

parse an inputStream that points to an AAINDEX database file

Parameters:

inputStream -

Throws:

IOException

getMatrices

public Map<String,SubstitutionMatrix<AminoAcidCompound>> getMatrices()