| org.biojava.nbio.aaproperties |
Set of classes that responsible for providing APIs and Command Prompt access to generate some basic physico-chemical properties of protein sequences.
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| org.biojava.nbio.aaproperties.xml |
Set of classes that handles the reading and writing of xml files.
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| org.biojava.nbio.core.alignment |
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| org.biojava.nbio.core.alignment.matrices |
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| org.biojava.nbio.core.sequence |
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| org.biojava.nbio.core.sequence.compound |
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| org.biojava.nbio.core.sequence.io |
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| org.biojava.nbio.core.sequence.storage |
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| org.biojava.nbio.core.sequence.template |
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| org.biojava.nbio.core.sequence.transcription |
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| org.biojava.nbio.core.sequence.views |
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| org.biojava.nbio.genome.io.fastq |
FASTQ and variants sequence format I/O.
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| org.biojava.nbio.structure.align.ce |
Classes related to the implementation of the CE alignment algorithm, here called jCE.
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| org.biojava.nbio.structure.align.multiple.util |
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| org.biojava.nbio.structure.cluster |
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| org.biojava.nbio.structure.io |
Input and Output of Structures
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