Package org.biojava.nbio.core.sequence.location

Class Summary

Class	Description
FuzzyPoint	Implementation for resolving fuzzy locations.
InsdcLocations	A collection of locations which are used whenever we work with INSDC; some of which could be deprecated (from INSDC's point of view) yet appear in records.
InsdcLocations.BondLocation	Used to represent bond locations equivalent to bond(7,8) or bond(7).
InsdcLocations.GroupLocation	Deprecated in INSDC yet still appears; equivalent to the order() directive except no 5' to 3' ordering is defined.
InsdcLocations.OneOfLocation	Deprecated in INSDC; refers to a set of locations of which one location could be valid e.g. one-of(location, location, location).
InsdcLocations.OrderLocation	Used to describe a 5' to 3' ordering but no firm assurance it is correct
InsdcParser<S extends AbstractSequence<C>,C extends Compound>	Parser for working with INSDC style locations.
LocationHelper	Helper methods for use with the Location classes.
SequenceLocation<S extends AbstractSequence<C>,C extends Compound>	A location in a sequence that keeps a reference to its parent sequence
SimpleLocation	Very basic implementation of the Location interface which defines a series of simple constructors.
SimplePoint	Basic implementation of the Point interface.