org.biojava.nbio.core.sequence.template

Interface ProxySequenceReader<C extends Compound>

All Superinterfaces:

Accessioned, Iterable<C>, Sequence<C>, SequenceReader<C>

All Known Implementing Classes:

ArrayListProxySequenceReader, BitSequenceReader, FourBitSequenceReader, GenbankProxySequenceReader, JoiningSequenceReader, RnaSequenceView, SequenceFileProxyLoader, SingleCompoundSequenceReader, StringProxySequenceReader, TwoBitSequenceReader, UniprotProxySequenceReader

public interface ProxySequenceReader<C extends Compound>
extends SequenceReader<C>

Method Summary

Methods inherited from interface org.biojava.nbio.core.sequence.template.SequenceReader

setCompoundSet, setContents

Methods inherited from interface org.biojava.nbio.core.sequence.template.Sequence

countCompounds, getAsList, getCompoundAt, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSequenceAsString, getSubSequence

Methods inherited from interface java.lang.Iterable

forEach, iterator, spliterator

Methods inherited from interface org.biojava.nbio.core.sequence.template.Accessioned

getAccession