Uses of Class
org.biojava.nbio.structure.align.util.ConfigurationException

Packages that use ConfigurationException

Package	Description
org.biojava.nbio.structure.align.ce	Classes related to the implementation of the CE alignment algorithm, here called jCE.
org.biojava.nbio.structure.align.fatcat	Classes related to the implementation of the FATCAT alignment algorithm, here called jFATCAT.
org.biojava.nbio.structure.align.seq
org.biojava.nbio.structure.align.util

Uses of ConfigurationException in org.biojava.nbio.structure.align.ce

Methods in org.biojava.nbio.structure.align.ce that throw ConfigurationException

Modifier and Type	Method and Description
static void	CeSideChainMain.main(String[] args)
static void	CeCPMain.main(String[] args)
void	UserArgumentProcessor.process(String[] argv) Process user arguments that have been provided from the command line

Uses of ConfigurationException in org.biojava.nbio.structure.align.fatcat

Methods in org.biojava.nbio.structure.align.fatcat that throw ConfigurationException

Modifier and Type	Method and Description
static void	FatCat.main(String[] argv) See demo/FatCatDemo.java for an example how to run.

Uses of ConfigurationException in org.biojava.nbio.structure.align.seq

Methods in org.biojava.nbio.structure.align.seq that throw ConfigurationException

Modifier and Type	Method and Description
static void	SmithWaterman3Daligner.main(String[] args)

Uses of ConfigurationException in org.biojava.nbio.structure.align.util

Methods in org.biojava.nbio.structure.align.util that throw ConfigurationException

Modifier and Type	Method and Description
static String[]	CliTools.configureBean(Object bean, String[] args) Configure a JavaBean based on a set of command line arguments.