GroupAsa (biojava 5.3.0 API)

java.lang.Object
- org.biojava.nbio.structure.asa.GroupAsa

All Implemented Interfaces:

Serializable
```
public class GroupAsa
extends Object
implements Serializable
```
A class to store the results of ASA calculations, it can hold ASA values per atom present in Group

Author:

duarte_j

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor and Description

GroupAsa(Group g)

Constructors
Constructor and Description
`GroupAsa(Group g)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`addAtomAsaC(double asa)`
`void`	`addAtomAsaU(double asa)`
`Object`	`clone()`
`double`	`getAsaC()` Returns the ASA of the residue in the complexed state
`double`	`getAsaU()` Returns the ASA of the residue in the uncomplexed state
`List<Double>`	`getAtomAsaCs()`
`List<Double>`	`getAtomAsaUs()`
`double`	`getBsa()` Returns the BSA value for this group, i.e. the difference between ASA uncomplexed and ASA complexed
`double`	`getBsaToAsaRatio()` Returns the bsa/asa(uncomplexed) ratio, i.e. the ratio of burial of a residue upon complexation
`Group`	`getGroup()`
`double`	`getRelativeAsaC()` Returns the relative (complexed) ASA, i.e. the ASA of the residue with respect to its ASA in an extended tri-peptide conformation (GLY-x-GLY)
`double`	`getRelativeAsaU()` Returns the relative (uncomplexed) ASA, i.e. the ASA of the residue with respect to its ASA in an extended tri-peptide conformation (GLY-x-GLY)
`void`	`setAsaC(double asaC)`
`void`	`setAsaU(double asaU)`
`void`	`setAtomAsaCs(List<Double> atomAsaCs)`
`void`	`setAtomAsaUs(List<Double> atomAsaUs)`

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - GroupAsa
```
public GroupAsa(Group g)
```
- Method Detail
  - getGroup
```
public Group getGroup()
```
  - getAsaU
```
public double getAsaU()
```
    Returns the ASA of the residue in the uncomplexed state
    
    Returns:
  - setAsaU
```
public void setAsaU(double asaU)
```
  - getAsaC
```
public double getAsaC()
```
    Returns the ASA of the residue in the complexed state
    
    Returns:
  - setAsaC
```
public void setAsaC(double asaC)
```
  - addAtomAsaU
```
public void addAtomAsaU(double asa)
```
  - addAtomAsaC
```
public void addAtomAsaC(double asa)
```
  - getAtomAsaUs
```
public List<Double> getAtomAsaUs()
```
  - setAtomAsaUs
```
public void setAtomAsaUs(List<Double> atomAsaUs)
```
  - getAtomAsaCs
```
public List<Double> getAtomAsaCs()
```
  - setAtomAsaCs
```
public void setAtomAsaCs(List<Double> atomAsaCs)
```
  - getBsa
```
public double getBsa()
```
    Returns the BSA value for this group, i.e. the difference between ASA uncomplexed and ASA complexed
    
    Returns:
  - getBsaToAsaRatio
```
public double getBsaToAsaRatio()
```
    Returns the bsa/asa(uncomplexed) ratio, i.e. the ratio of burial of a residue upon complexation
    
    Returns:
  - getRelativeAsaU
```
public double getRelativeAsaU()
```
    Returns the relative (uncomplexed) ASA, i.e. the ASA of the residue with respect to its ASA in an extended tri-peptide conformation (GLY-x-GLY)
    
    Returns:
  - getRelativeAsaC
```
public double getRelativeAsaC()
```
    Returns the relative (complexed) ASA, i.e. the ASA of the residue with respect to its ASA in an extended tri-peptide conformation (GLY-x-GLY)
    
    Returns:
  - clone
```
public Object clone()
```
    Overrides:
    
    clone in class Object

Class GroupAsa

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

GroupAsa

Method Detail

getGroup

getAsaU

setAsaU

getAsaC

setAsaC

addAtomAsaU

addAtomAsaC

getAtomAsaUs

setAtomAsaUs

getAtomAsaCs

setAtomAsaCs

getBsa

getBsaToAsaRatio

getRelativeAsaU

getRelativeAsaC

clone