| Package | Description |
|---|---|
| org.biojava.nbio.structure |
Interfaces and classes for protein structure (PDB).
|
| org.biojava.nbio.structure.align.util | |
| org.biojava.nbio.structure.basepairs | |
| org.biojava.nbio.structure.contact | |
| org.biojava.nbio.structure.xtal |
| Class and Description |
|---|
| AtomContactSet
A set of atom-atom contacts to hold the results of intra and inter-chain contact calculations
|
| Class and Description |
|---|
| Pair
A Pair of objects.
|
| Class and Description |
|---|
| Pair
A Pair of objects.
|
| Class and Description |
|---|
| AtomContact
A pair of atoms that are in contact
|
| AtomContactSet
A set of atom-atom contacts to hold the results of intra and inter-chain contact calculations
|
| AtomIdentifier |
| BoundingBox
A bounding box for short cutting some geometrical calculations.
|
| Contact
A simple class to store contacts in the form of pairs of indices and a distance associated to them.
|
| Grid
A grid to be used for calculating atom contacts through a spatial hashing algorithm.
|
| GridCell
A grid cell to be used in contact calculation via spatial hashing algorithm.
|
| GroupContact
A pair of residues that are in contact
|
| GroupContactSet
A set of residue-residue contacts.
|
| Pair
A Pair of objects.
|
| StructureInterface
An interface between 2 molecules (2 sets of atoms).
|
| StructureInterfaceCluster |
| StructureInterfaceList
A list of interfaces between 2 molecules (2 sets of atoms)
|
| Class and Description |
|---|
| BoundingBox
A bounding box for short cutting some geometrical calculations.
|
| StructureInterfaceList
A list of interfaces between 2 molecules (2 sets of atoms)
|
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