Package org.biojava.nbio.structure.domain

Interface Summary

Interface	Description
DomainProvider	Decomposes a structure from the PDB into representative domains
PDPProvider	Decomposes a structure into representative PDP domains.

Class Summary

Class	Description
AssignmentXMLSerializer
DomainProviderFactory	A simple factory object that returns the system wide default DomainProvider
LocalProteinDomainParser	Protein Domain Parser is a an algorithm that attempts at assigning domains for 3D protein structures.
PDBDomainProvider	Class to fetch domains through the RCSB's REST API.
PDPDomain
RemoteDomainProvider	A DomainProvider that uses a mixture of SCOP and PDP domains.
RemotePDPProvider	A class that provided PDP assignments that are loaded from a remote web server
SerializableCache<K,V>	A class that provides all that is necessary to create a Serializable Cache