AtomSites (biojava 5.3.0 API)

java.lang.Object
- org.biojava.nbio.structure.io.mmcif.model.AbstractBean
- - org.biojava.nbio.structure.io.mmcif.model.AtomSites

```
public class AtomSites
extends AbstractBean
```
A class containing the _atom_sites data. Equivalent to the SCALE records in PDB files.

Author:

Jose Duarte

Constructor Summary

Constructors
Constructor and Description

AtomSites()

Constructors
Constructor and Description
`AtomSites()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`String`	`getCartn_transf_matrix11()`
`String`	`getCartn_transf_matrix12()`
`String`	`getCartn_transf_matrix13()`
`String`	`getCartn_transf_matrix21()`
`String`	`getCartn_transf_matrix22()`
`String`	`getCartn_transf_matrix23()`
`String`	`getCartn_transf_matrix31()`
`String`	`getCartn_transf_matrix32()`
`String`	`getCartn_transf_matrix33()`
`String`	`getCartn_transf_vector1()`
`String`	`getCartn_transf_vector2()`
`String`	`getCartn_transf_vector3()`
`String`	`getCartn_transform_axes()`
`String`	`getEntry_id()`
`String`	`getFract_transf_matrix11()`
`String`	`getFract_transf_matrix12()`
`String`	`getFract_transf_matrix13()`
`String`	`getFract_transf_matrix21()`
`String`	`getFract_transf_matrix22()`
`String`	`getFract_transf_matrix23()`
`String`	`getFract_transf_matrix31()`
`String`	`getFract_transf_matrix32()`
`String`	`getFract_transf_matrix33()`
`String`	`getFract_transf_vector1()`
`String`	`getFract_transf_vector2()`
`String`	`getFract_transf_vector3()`
`void`	`setCartn_transf_matrix11(String cartn_transf_matrix11)`
`void`	`setCartn_transf_matrix12(String cartn_transf_matrix12)`
`void`	`setCartn_transf_matrix13(String cartn_transf_matrix13)`
`void`	`setCartn_transf_matrix21(String cartn_transf_matrix21)`
`void`	`setCartn_transf_matrix22(String cartn_transf_matrix22)`
`void`	`setCartn_transf_matrix23(String cartn_transf_matrix23)`
`void`	`setCartn_transf_matrix31(String cartn_transf_matrix31)`
`void`	`setCartn_transf_matrix32(String cartn_transf_matrix32)`
`void`	`setCartn_transf_matrix33(String cartn_transf_matrix33)`
`void`	`setCartn_transf_vector1(String cartn_transf_vector1)`
`void`	`setCartn_transf_vector2(String cartn_transf_vector2)`
`void`	`setCartn_transf_vector3(String cartn_transf_vector3)`
`void`	`setCartn_transform_axes(String cartn_transform_axes)`
`void`	`setEntry_id(String entry_id)`
`void`	`setFract_transf_matrix11(String fract_transf_matrix11)`
`void`	`setFract_transf_matrix12(String fract_transf_matrix12)`
`void`	`setFract_transf_matrix13(String fract_transf_matrix13)`
`void`	`setFract_transf_matrix21(String fract_transf_matrix21)`
`void`	`setFract_transf_matrix22(String fract_transf_matrix22)`
`void`	`setFract_transf_matrix23(String fract_transf_matrix23)`
`void`	`setFract_transf_matrix31(String fract_transf_matrix31)`
`void`	`setFract_transf_matrix32(String fract_transf_matrix32)`
`void`	`setFract_transf_matrix33(String fract_transf_matrix33)`
`void`	`setFract_transf_vector1(String fract_transf_vector1)`
`void`	`setFract_transf_vector2(String fract_transf_vector2)`
`void`	`setFract_transf_vector3(String fract_transf_vector3)`

Methods inherited from class org.biojava.nbio.structure.io.mmcif.model.AbstractBean
toString

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - AtomSites
```
public AtomSites()
```
- Method Detail
  - getEntry_id
```
public String getEntry_id()
```
  - setEntry_id
```
public void setEntry_id(String entry_id)
```
  - getCartn_transform_axes
```
public String getCartn_transform_axes()
```
    Returns:
    
    the cartn_transform_axes
  - setCartn_transform_axes
```
public void setCartn_transform_axes(String cartn_transform_axes)
```
    Parameters:
    
    cartn_transform_axes - the cartn_transform_axes to set
  - getFract_transf_matrix11
```
public String getFract_transf_matrix11()
```
    Returns:
    
    the fract_transf_matrix11
  - setFract_transf_matrix11
```
public void setFract_transf_matrix11(String fract_transf_matrix11)
```
    Parameters:
    
    fract_transf_matrix11 - the fract_transf_matrix11 to set
  - getFract_transf_matrix12
```
public String getFract_transf_matrix12()
```
    Returns:
    
    the fract_transf_matrix12
  - setFract_transf_matrix12
```
public void setFract_transf_matrix12(String fract_transf_matrix12)
```
    Parameters:
    
    fract_transf_matrix12 - the fract_transf_matrix12 to set
  - getFract_transf_matrix13
```
public String getFract_transf_matrix13()
```
    Returns:
    
    the fract_transf_matrix13
  - setFract_transf_matrix13
```
public void setFract_transf_matrix13(String fract_transf_matrix13)
```
    Parameters:
    
    fract_transf_matrix13 - the fract_transf_matrix13 to set
  - getFract_transf_matrix21
```
public String getFract_transf_matrix21()
```
    Returns:
    
    the fract_transf_matrix21
  - setFract_transf_matrix21
```
public void setFract_transf_matrix21(String fract_transf_matrix21)
```
    Parameters:
    
    fract_transf_matrix21 - the fract_transf_matrix21 to set
  - getFract_transf_matrix22
```
public String getFract_transf_matrix22()
```
    Returns:
    
    the fract_transf_matrix22
  - setFract_transf_matrix22
```
public void setFract_transf_matrix22(String fract_transf_matrix22)
```
    Parameters:
    
    fract_transf_matrix22 - the fract_transf_matrix22 to set
  - getFract_transf_matrix23
```
public String getFract_transf_matrix23()
```
    Returns:
    
    the fract_transf_matrix23
  - setFract_transf_matrix23
```
public void setFract_transf_matrix23(String fract_transf_matrix23)
```
    Parameters:
    
    fract_transf_matrix23 - the fract_transf_matrix23 to set
  - getFract_transf_matrix31
```
public String getFract_transf_matrix31()
```
    Returns:
    
    the fract_transf_matrix31
  - setFract_transf_matrix31
```
public void setFract_transf_matrix31(String fract_transf_matrix31)
```
    Parameters:
    
    fract_transf_matrix31 - the fract_transf_matrix31 to set
  - getFract_transf_matrix32
```
public String getFract_transf_matrix32()
```
    Returns:
    
    the fract_transf_matrix32
  - setFract_transf_matrix32
```
public void setFract_transf_matrix32(String fract_transf_matrix32)
```
    Parameters:
    
    fract_transf_matrix32 - the fract_transf_matrix32 to set
  - getFract_transf_matrix33
```
public String getFract_transf_matrix33()
```
    Returns:
    
    the fract_transf_matrix33
  - setFract_transf_matrix33
```
public void setFract_transf_matrix33(String fract_transf_matrix33)
```
    Parameters:
    
    fract_transf_matrix33 - the fract_transf_matrix33 to set
  - getFract_transf_vector1
```
public String getFract_transf_vector1()
```
    Returns:
    
    the fract_transf_vector1
  - setFract_transf_vector1
```
public void setFract_transf_vector1(String fract_transf_vector1)
```
    Parameters:
    
    fract_transf_vector1 - the fract_transf_vector1 to set
  - getFract_transf_vector2
```
public String getFract_transf_vector2()
```
    Returns:
    
    the fract_transf_vector2
  - setFract_transf_vector2
```
public void setFract_transf_vector2(String fract_transf_vector2)
```
    Parameters:
    
    fract_transf_vector2 - the fract_transf_vector2 to set
  - getFract_transf_vector3
```
public String getFract_transf_vector3()
```
    Returns:
    
    the fract_transf_vector3
  - setFract_transf_vector3
```
public void setFract_transf_vector3(String fract_transf_vector3)
```
    Parameters:
    
    fract_transf_vector3 - the fract_transf_vector3 to set
  - getCartn_transf_matrix11
```
public String getCartn_transf_matrix11()
```
    Returns:
    
    the cartn_transf_matrix11
  - setCartn_transf_matrix11
```
public void setCartn_transf_matrix11(String cartn_transf_matrix11)
```
    Parameters:
    
    cartn_transf_matrix11 - the cartn_transf_matrix11 to set
  - getCartn_transf_matrix12
```
public String getCartn_transf_matrix12()
```
    Returns:
    
    the cartn_transf_matrix12
  - setCartn_transf_matrix12
```
public void setCartn_transf_matrix12(String cartn_transf_matrix12)
```
    Parameters:
    
    cartn_transf_matrix12 - the cartn_transf_matrix12 to set
  - getCartn_transf_matrix13
```
public String getCartn_transf_matrix13()
```
    Returns:
    
    the cartn_transf_matrix13
  - setCartn_transf_matrix13
```
public void setCartn_transf_matrix13(String cartn_transf_matrix13)
```
    Parameters:
    
    cartn_transf_matrix13 - the cartn_transf_matrix13 to set
  - getCartn_transf_matrix21
```
public String getCartn_transf_matrix21()
```
    Returns:
    
    the cartn_transf_matrix21
  - setCartn_transf_matrix21
```
public void setCartn_transf_matrix21(String cartn_transf_matrix21)
```
    Parameters:
    
    cartn_transf_matrix21 - the cartn_transf_matrix21 to set
  - getCartn_transf_matrix22
```
public String getCartn_transf_matrix22()
```
    Returns:
    
    the cartn_transf_matrix22
  - setCartn_transf_matrix22
```
public void setCartn_transf_matrix22(String cartn_transf_matrix22)
```
    Parameters:
    
    cartn_transf_matrix22 - the cartn_transf_matrix22 to set
  - getCartn_transf_matrix23
```
public String getCartn_transf_matrix23()
```
    Returns:
    
    the cartn_transf_matrix23
  - setCartn_transf_matrix23
```
public void setCartn_transf_matrix23(String cartn_transf_matrix23)
```
    Parameters:
    
    cartn_transf_matrix23 - the cartn_transf_matrix23 to set
  - getCartn_transf_matrix31
```
public String getCartn_transf_matrix31()
```
    Returns:
    
    the cartn_transf_matrix31
  - setCartn_transf_matrix31
```
public void setCartn_transf_matrix31(String cartn_transf_matrix31)
```
    Parameters:
    
    cartn_transf_matrix31 - the cartn_transf_matrix31 to set
  - getCartn_transf_matrix32
```
public String getCartn_transf_matrix32()
```
    Returns:
    
    the cartn_transf_matrix32
  - setCartn_transf_matrix32
```
public void setCartn_transf_matrix32(String cartn_transf_matrix32)
```
    Parameters:
    
    cartn_transf_matrix32 - the cartn_transf_matrix32 to set
  - getCartn_transf_matrix33
```
public String getCartn_transf_matrix33()
```
    Returns:
    
    the cartn_transf_matrix33
  - setCartn_transf_matrix33
```
public void setCartn_transf_matrix33(String cartn_transf_matrix33)
```
    Parameters:
    
    cartn_transf_matrix33 - the cartn_transf_matrix33 to set
  - getCartn_transf_vector1
```
public String getCartn_transf_vector1()
```
    Returns:
    
    the cartn_transf_vector1
  - setCartn_transf_vector1
```
public void setCartn_transf_vector1(String cartn_transf_vector1)
```
    Parameters:
    
    cartn_transf_vector1 - the cartn_transf_vector1 to set
  - getCartn_transf_vector2
```
public String getCartn_transf_vector2()
```
    Returns:
    
    the cartn_transf_vector2
  - setCartn_transf_vector2
```
public void setCartn_transf_vector2(String cartn_transf_vector2)
```
    Parameters:
    
    cartn_transf_vector2 - the cartn_transf_vector2 to set
  - getCartn_transf_vector3
```
public String getCartn_transf_vector3()
```
    Returns:
    
    the cartn_transf_vector3
  - setCartn_transf_vector3
```
public void setCartn_transf_vector3(String cartn_transf_vector3)
```
    Parameters:
    
    cartn_transf_vector3 - the cartn_transf_vector3 to set

Class AtomSites

Constructor Summary

Method Summary

Methods inherited from class org.biojava.nbio.structure.io.mmcif.model.AbstractBean

Methods inherited from class java.lang.Object

Constructor Detail

AtomSites

Method Detail

getEntry_id

setEntry_id

getCartn_transform_axes

setCartn_transform_axes

getFract_transf_matrix11

setFract_transf_matrix11

getFract_transf_matrix12

setFract_transf_matrix12

getFract_transf_matrix13

setFract_transf_matrix13

getFract_transf_matrix21

setFract_transf_matrix21

getFract_transf_matrix22

setFract_transf_matrix22

getFract_transf_matrix23

setFract_transf_matrix23

getFract_transf_matrix31

setFract_transf_matrix31

getFract_transf_matrix32

setFract_transf_matrix32

getFract_transf_matrix33

setFract_transf_matrix33

getFract_transf_vector1

setFract_transf_vector1

getFract_transf_vector2

setFract_transf_vector2

getFract_transf_vector3

setFract_transf_vector3

getCartn_transf_matrix11

setCartn_transf_matrix11

getCartn_transf_matrix12

setCartn_transf_matrix12

getCartn_transf_matrix13

setCartn_transf_matrix13

getCartn_transf_matrix21

setCartn_transf_matrix21

getCartn_transf_matrix22

setCartn_transf_matrix22

getCartn_transf_matrix23

setCartn_transf_matrix23

getCartn_transf_matrix31

setCartn_transf_matrix31

getCartn_transf_matrix32

setCartn_transf_matrix32

getCartn_transf_matrix33

setCartn_transf_matrix33

getCartn_transf_vector1

setCartn_transf_vector1

getCartn_transf_vector2

setCartn_transf_vector2

getCartn_transf_vector3

setCartn_transf_vector3