EntitySrcGen (biojava 5.3.0 API)

java.lang.Object
- org.biojava.nbio.structure.io.mmcif.model.EntitySrcGen

```
public class EntitySrcGen
extends Object
```
Data items in the ENTITY_SRC_GEN category record details of the source from which the entity was obtained in cases where the source was genetically manipulated. The following are treated separately: items pertaining to the tissue from which the gene was obtained, items pertaining to the host organism for gene expression and items pertaining to the actual producing organism (plasmid).

Author:

Andreas Prlic

Constructor Summary

Constructors
Constructor and Description

EntitySrcGen()

Constructors
Constructor and Description
`EntitySrcGen()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`String`	`getEntity_id()`
`String`	`getExpression_system_id()`
`String`	`getGene_src_common_name()`
`String`	`getGene_src_details()`
`String`	`getGene_src_dev_stage()`
`String`	`getGene_src_genus()`
`String`	`getGene_src_species()`
`String`	`getGene_src_strain()`
`String`	`getGene_src_tissue_fraction()`
`String`	`getGene_src_tissue()`
`String`	`getHost_org_common_name()`
`String`	`getHost_org_details()`
`String`	`getHost_org_genus()`
`String`	`getHost_org_species()`
`String`	`getHost_org_strain()`
`String`	`getPdbx_alt_source_flag()`
`String`	`getPdbx_beg_seq_num()`
`String`	`getPdbx_description()`
`String`	`getPdbx_end_seq_num()`
`String`	`getPdbx_gene_src_atcc()`
`String`	`getPdbx_gene_src_cell_line()`
`String`	`getPdbx_gene_src_cell()`
`String`	`getPdbx_gene_src_cellular_location()`
`String`	`getPdbx_gene_src_fragment()`
`String`	`getPdbx_gene_src_gene()`
`String`	`getPdbx_gene_src_ncbi_taxonomy_id()`
`String`	`getPdbx_gene_src_organ()`
`String`	`getPdbx_gene_src_organelle()`
`String`	`getPdbx_gene_src_plasmid_name()`
`String`	`getPdbx_gene_src_plasmid()`
`String`	`getPdbx_gene_src_scientific_name()`
`String`	`getPdbx_gene_src_variant()`
`String`	`getPdbx_host_org_atcc()`
`String`	`getPdbx_host_org_cell_line()`
`String`	`getPdbx_host_org_cell()`
`String`	`getPdbx_host_org_cellular_location()`
`String`	`getPdbx_host_org_culture_collection()`
`String`	`getPdbx_host_org_gene()`
`String`	`getPdbx_host_org_ncbi_taxonomy_id()`
`String`	`getPdbx_host_org_organ()`
`String`	`getPdbx_host_org_organelle()`
`String`	`getPdbx_host_org_scientific_name()`
`String`	`getPdbx_host_org_strain()`
`String`	`getPdbx_host_org_tissue_fraction()`
`String`	`getPdbx_host_org_tissue()`
`String`	`getPdbx_host_org_variant()`
`String`	`getPdbx_host_org_vector_type()`
`String`	`getPdbx_host_org_vector()`
`String`	`getPdbx_seq_type()`
`String`	`getPdbx_src_id()`
`String`	`getPlasmid_details()`
`String`	`getPlasmid_name()`
`String`	`getStart_construct_id()`
`void`	`setEntity_id(String entity_id)`
`void`	`setExpression_system_id(String expression_system_id)`
`void`	`setGene_src_common_name(String gene_src_common_name)`
`void`	`setGene_src_details(String gene_src_details)`
`void`	`setGene_src_dev_stage(String gene_src_dev_stage)`
`void`	`setGene_src_genus(String gene_src_genus)`
`void`	`setGene_src_species(String gene_src_species)`
`void`	`setGene_src_strain(String gene_src_strain)`
`void`	`setGene_src_tissue_fraction(String gene_src_tissue_fraction)`
`void`	`setGene_src_tissue(String gene_src_tissue)`
`void`	`setHost_org_common_name(String host_org_common_name)`
`void`	`setHost_org_details(String host_org_details)`
`void`	`setHost_org_genus(String host_org_genus)`
`void`	`setHost_org_species(String host_org_species)`
`void`	`setHost_org_strain(String host_org_strain)`
`void`	`setPdbx_alt_source_flag(String pdbx_alt_source_flag)`
`void`	`setPdbx_beg_seq_num(String pdbx_beg_seq_num)`
`void`	`setPdbx_description(String pdbx_description)`
`void`	`setPdbx_end_seq_num(String pdbx_end_seq_num)`
`void`	`setPdbx_gene_src_atcc(String pdbx_gene_src_atcc)`
`void`	`setPdbx_gene_src_cell_line(String pdbx_gene_src_cell_line)`
`void`	`setPdbx_gene_src_cell(String pdbx_gene_src_cell)`
`void`	`setPdbx_gene_src_cellular_location(String pdbx_gene_src_cellular_location)`
`void`	`setPdbx_gene_src_fragment(String pdbx_gene_src_fragment)`
`void`	`setPdbx_gene_src_gene(String pdbx_gene_src_gene)`
`void`	`setPdbx_gene_src_ncbi_taxonomy_id(String pdbx_gene_src_ncbi_taxonomy_id)`
`void`	`setPdbx_gene_src_organ(String pdbx_gene_src_organ)`
`void`	`setPdbx_gene_src_organelle(String pdbx_gene_src_organelle)`
`void`	`setPdbx_gene_src_plasmid_name(String pdbx_gene_src_plasmid_name)`
`void`	`setPdbx_gene_src_plasmid(String pdbx_gene_src_plasmid)`
`void`	`setPdbx_gene_src_scientific_name(String pdbx_gene_src_scientific_name)`
`void`	`setPdbx_gene_src_variant(String pdbx_gene_src_variant)`
`void`	`setPdbx_host_org_atcc(String pdbx_host_org_atcc)`
`void`	`setPdbx_host_org_cell_line(String pdbx_host_org_cell_line)`
`void`	`setPdbx_host_org_cell(String pdbx_host_org_cell)`
`void`	`setPdbx_host_org_cellular_location(String pdbx_host_org_cellular_location)`
`void`	`setPdbx_host_org_culture_collection(String pdbx_host_org_culture_collection)`
`void`	`setPdbx_host_org_gene(String pdbx_host_org_gene)`
`void`	`setPdbx_host_org_ncbi_taxonomy_id(String pdbx_host_org_ncbi_taxonomy_id)`
`void`	`setPdbx_host_org_organ(String pdbx_host_org_organ)`
`void`	`setPdbx_host_org_organelle(String pdbx_host_org_organelle)`
`void`	`setPdbx_host_org_scientific_name(String pdbx_host_org_scientific_name)`
`void`	`setPdbx_host_org_strain(String pdbx_host_org_strain)`
`void`	`setPdbx_host_org_tissue_fraction(String pdbx_host_org_tissue_fraction)`
`void`	`setPdbx_host_org_tissue(String pdbx_host_org_tissue)`
`void`	`setPdbx_host_org_variant(String pdbx_host_org_variant)`
`void`	`setPdbx_host_org_vector_type(String pdbx_host_org_vector_type)`
`void`	`setPdbx_host_org_vector(String pdbx_host_org_vector)`
`void`	`setPdbx_seq_type(String pdbx_seq_type)`
`void`	`setPdbx_src_id(String pdbx_src_id)`
`void`	`setPlasmid_details(String plasmid_details)`
`void`	`setPlasmid_name(String plasmid_name)`
`void`	`setStart_construct_id(String start_construct_id)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- EntitySrcGen
```
public EntitySrcGen()
```

Method Detail

getEntity_id
```
public String getEntity_id()
```

setEntity_id

public void setEntity_id(String entity_id)

getExpression_system_id

public String getExpression_system_id()

setExpression_system_id

public void setExpression_system_id(String expression_system_id)

getGene_src_common_name

public String getGene_src_common_name()

setGene_src_common_name

public void setGene_src_common_name(String gene_src_common_name)

getGene_src_details
```
public String getGene_src_details()
```

setGene_src_details

public void setGene_src_details(String gene_src_details)

getGene_src_dev_stage
```
public String getGene_src_dev_stage()
```

setGene_src_dev_stage

public void setGene_src_dev_stage(String gene_src_dev_stage)

getGene_src_genus
```
public String getGene_src_genus()
```

setGene_src_genus

public void setGene_src_genus(String gene_src_genus)

getGene_src_species
```
public String getGene_src_species()
```

setGene_src_species

public void setGene_src_species(String gene_src_species)

getGene_src_strain
```
public String getGene_src_strain()
```

setGene_src_strain

public void setGene_src_strain(String gene_src_strain)

getGene_src_tissue
```
public String getGene_src_tissue()
```

setGene_src_tissue

public void setGene_src_tissue(String gene_src_tissue)

getGene_src_tissue_fraction

public String getGene_src_tissue_fraction()

setGene_src_tissue_fraction

public void setGene_src_tissue_fraction(String gene_src_tissue_fraction)

getHost_org_common_name

public String getHost_org_common_name()

setHost_org_common_name

public void setHost_org_common_name(String host_org_common_name)

getHost_org_details
```
public String getHost_org_details()
```

setHost_org_details

public void setHost_org_details(String host_org_details)

getHost_org_genus
```
public String getHost_org_genus()
```

setHost_org_genus

public void setHost_org_genus(String host_org_genus)

getHost_org_species
```
public String getHost_org_species()
```

setHost_org_species

public void setHost_org_species(String host_org_species)

getHost_org_strain
```
public String getHost_org_strain()
```

setHost_org_strain

public void setHost_org_strain(String host_org_strain)

getPdbx_src_id
```
public String getPdbx_src_id()
```

setPdbx_src_id

public void setPdbx_src_id(String pdbx_src_id)

getPdbx_seq_type
```
public String getPdbx_seq_type()
```

setPdbx_seq_type

public void setPdbx_seq_type(String pdbx_seq_type)

getPdbx_alt_source_flag
```
public String getPdbx_alt_source_flag()
```
Returns:

the pdbx_alt_source_flag

setPdbx_alt_source_flag
```
public void setPdbx_alt_source_flag(String pdbx_alt_source_flag)
```
Parameters:

pdbx_alt_source_flag - the pdbx_alt_source_flag to set

getPdbx_beg_seq_num
```
public String getPdbx_beg_seq_num()
```

setPdbx_beg_seq_num

public void setPdbx_beg_seq_num(String pdbx_beg_seq_num)

getPdbx_end_seq_num
```
public String getPdbx_end_seq_num()
```

setPdbx_end_seq_num

public void setPdbx_end_seq_num(String pdbx_end_seq_num)

getPdbx_description
```
public String getPdbx_description()
```

setPdbx_description

public void setPdbx_description(String pdbx_description)

getPdbx_gene_src_atcc
```
public String getPdbx_gene_src_atcc()
```

setPdbx_gene_src_atcc

public void setPdbx_gene_src_atcc(String pdbx_gene_src_atcc)

getPdbx_gene_src_cell
```
public String getPdbx_gene_src_cell()
```

setPdbx_gene_src_cell

public void setPdbx_gene_src_cell(String pdbx_gene_src_cell)

getPdbx_gene_src_cell_line

public String getPdbx_gene_src_cell_line()

setPdbx_gene_src_cell_line

public void setPdbx_gene_src_cell_line(String pdbx_gene_src_cell_line)

getPdbx_gene_src_cellular_location

public String getPdbx_gene_src_cellular_location()

setPdbx_gene_src_cellular_location

public void setPdbx_gene_src_cellular_location(String pdbx_gene_src_cellular_location)

getPdbx_gene_src_fragment

public String getPdbx_gene_src_fragment()

setPdbx_gene_src_fragment

public void setPdbx_gene_src_fragment(String pdbx_gene_src_fragment)

getPdbx_gene_src_gene
```
public String getPdbx_gene_src_gene()
```

setPdbx_gene_src_gene

public void setPdbx_gene_src_gene(String pdbx_gene_src_gene)

getPdbx_gene_src_ncbi_taxonomy_id

public String getPdbx_gene_src_ncbi_taxonomy_id()

setPdbx_gene_src_ncbi_taxonomy_id

public void setPdbx_gene_src_ncbi_taxonomy_id(String pdbx_gene_src_ncbi_taxonomy_id)

getPdbx_gene_src_organ

public String getPdbx_gene_src_organ()

setPdbx_gene_src_organ

public void setPdbx_gene_src_organ(String pdbx_gene_src_organ)

getPdbx_gene_src_organelle

public String getPdbx_gene_src_organelle()

setPdbx_gene_src_organelle

public void setPdbx_gene_src_organelle(String pdbx_gene_src_organelle)

getPdbx_gene_src_plasmid

public String getPdbx_gene_src_plasmid()

setPdbx_gene_src_plasmid

public void setPdbx_gene_src_plasmid(String pdbx_gene_src_plasmid)

getPdbx_gene_src_plasmid_name

public String getPdbx_gene_src_plasmid_name()

setPdbx_gene_src_plasmid_name

public void setPdbx_gene_src_plasmid_name(String pdbx_gene_src_plasmid_name)

getPdbx_gene_src_scientific_name

public String getPdbx_gene_src_scientific_name()

setPdbx_gene_src_scientific_name

public void setPdbx_gene_src_scientific_name(String pdbx_gene_src_scientific_name)

getPdbx_gene_src_variant

public String getPdbx_gene_src_variant()

setPdbx_gene_src_variant

public void setPdbx_gene_src_variant(String pdbx_gene_src_variant)

getPdbx_host_org_atcc
```
public String getPdbx_host_org_atcc()
```

setPdbx_host_org_atcc

public void setPdbx_host_org_atcc(String pdbx_host_org_atcc)

getPdbx_host_org_cell
```
public String getPdbx_host_org_cell()
```

setPdbx_host_org_cell

public void setPdbx_host_org_cell(String pdbx_host_org_cell)

getPdbx_host_org_cell_line

public String getPdbx_host_org_cell_line()

setPdbx_host_org_cell_line

public void setPdbx_host_org_cell_line(String pdbx_host_org_cell_line)

getPdbx_host_org_cellular_location

public String getPdbx_host_org_cellular_location()

setPdbx_host_org_cellular_location

public void setPdbx_host_org_cellular_location(String pdbx_host_org_cellular_location)

getPdbx_host_org_culture_collection

public String getPdbx_host_org_culture_collection()

setPdbx_host_org_culture_collection

public void setPdbx_host_org_culture_collection(String pdbx_host_org_culture_collection)

getPdbx_host_org_gene
```
public String getPdbx_host_org_gene()
```

setPdbx_host_org_gene

public void setPdbx_host_org_gene(String pdbx_host_org_gene)

getPdbx_host_org_ncbi_taxonomy_id

public String getPdbx_host_org_ncbi_taxonomy_id()

setPdbx_host_org_ncbi_taxonomy_id

public void setPdbx_host_org_ncbi_taxonomy_id(String pdbx_host_org_ncbi_taxonomy_id)

getPdbx_host_org_organ

public String getPdbx_host_org_organ()

setPdbx_host_org_organ

public void setPdbx_host_org_organ(String pdbx_host_org_organ)

getPdbx_host_org_organelle

public String getPdbx_host_org_organelle()

setPdbx_host_org_organelle

public void setPdbx_host_org_organelle(String pdbx_host_org_organelle)

getPdbx_host_org_scientific_name

public String getPdbx_host_org_scientific_name()

setPdbx_host_org_scientific_name

public void setPdbx_host_org_scientific_name(String pdbx_host_org_scientific_name)

getPdbx_host_org_strain

public String getPdbx_host_org_strain()

setPdbx_host_org_strain

public void setPdbx_host_org_strain(String pdbx_host_org_strain)

getPdbx_host_org_tissue

public String getPdbx_host_org_tissue()

setPdbx_host_org_tissue

public void setPdbx_host_org_tissue(String pdbx_host_org_tissue)

getPdbx_host_org_tissue_fraction

public String getPdbx_host_org_tissue_fraction()

setPdbx_host_org_tissue_fraction

public void setPdbx_host_org_tissue_fraction(String pdbx_host_org_tissue_fraction)

getPdbx_host_org_variant

public String getPdbx_host_org_variant()

setPdbx_host_org_variant

public void setPdbx_host_org_variant(String pdbx_host_org_variant)

getPdbx_host_org_vector

public String getPdbx_host_org_vector()

setPdbx_host_org_vector

public void setPdbx_host_org_vector(String pdbx_host_org_vector)

getPdbx_host_org_vector_type

public String getPdbx_host_org_vector_type()

setPdbx_host_org_vector_type

public void setPdbx_host_org_vector_type(String pdbx_host_org_vector_type)

getPlasmid_details
```
public String getPlasmid_details()
```

setPlasmid_details

public void setPlasmid_details(String plasmid_details)

getPlasmid_name
```
public String getPlasmid_name()
```

setPlasmid_name

public void setPlasmid_name(String plasmid_name)

getStart_construct_id
```
public String getStart_construct_id()
```

setStart_construct_id

public void setStart_construct_id(String start_construct_id)

Class EntitySrcGen

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

EntitySrcGen

Method Detail

getEntity_id

setEntity_id

getExpression_system_id

setExpression_system_id

getGene_src_common_name

setGene_src_common_name

getGene_src_details

setGene_src_details

getGene_src_dev_stage

setGene_src_dev_stage

getGene_src_genus

setGene_src_genus

getGene_src_species

setGene_src_species

getGene_src_strain

setGene_src_strain

getGene_src_tissue

setGene_src_tissue

getGene_src_tissue_fraction

setGene_src_tissue_fraction

getHost_org_common_name

setHost_org_common_name

getHost_org_details

setHost_org_details

getHost_org_genus

setHost_org_genus

getHost_org_species

setHost_org_species

getHost_org_strain

setHost_org_strain

getPdbx_src_id

setPdbx_src_id

getPdbx_seq_type

setPdbx_seq_type

getPdbx_alt_source_flag

setPdbx_alt_source_flag

getPdbx_beg_seq_num

setPdbx_beg_seq_num

getPdbx_end_seq_num

setPdbx_end_seq_num

getPdbx_description

setPdbx_description

getPdbx_gene_src_atcc

setPdbx_gene_src_atcc

getPdbx_gene_src_cell

setPdbx_gene_src_cell

getPdbx_gene_src_cell_line

setPdbx_gene_src_cell_line

getPdbx_gene_src_cellular_location

setPdbx_gene_src_cellular_location

getPdbx_gene_src_fragment

setPdbx_gene_src_fragment

getPdbx_gene_src_gene

setPdbx_gene_src_gene

getPdbx_gene_src_ncbi_taxonomy_id

setPdbx_gene_src_ncbi_taxonomy_id

getPdbx_gene_src_organ

setPdbx_gene_src_organ

getPdbx_gene_src_organelle

setPdbx_gene_src_organelle

getPdbx_gene_src_plasmid

setPdbx_gene_src_plasmid

getPdbx_gene_src_plasmid_name

setPdbx_gene_src_plasmid_name

getPdbx_gene_src_scientific_name

setPdbx_gene_src_scientific_name

getPdbx_gene_src_variant

setPdbx_gene_src_variant

getPdbx_host_org_atcc

setPdbx_host_org_atcc

getPdbx_host_org_cell

setPdbx_host_org_cell

getPdbx_host_org_cell_line