Uses of Class
org.biojava.nbio.structure.io.mmcif.model.AtomSite

Packages that use AtomSite

Package	Description
org.biojava.nbio.structure.io.mmcif	Input and Output of mmcif files.

Uses of AtomSite in org.biojava.nbio.structure.io.mmcif

Methods in org.biojava.nbio.structure.io.mmcif that return AtomSite

Modifier and Type	Method and Description
static AtomSite	MMCIFFileTools.convertAtomToAtomSite(Atom a, int model, String chainName, String chainId) Converts an Atom object to an AtomSite object.
static AtomSite	MMCIFFileTools.convertAtomToAtomSite(Atom a, int model, String chainName, String chainId, int atomId) Converts an Atom object to an AtomSite object.

Methods in org.biojava.nbio.structure.io.mmcif that return types with arguments of type AtomSite

Modifier and Type	Method and Description
static List<AtomSite>	MMCIFFileTools.convertChainToAtomSites(Chain c, int model, String chainName, String chainId) Converts a Chain into a List of AtomSite objects
static List<AtomSite>	MMCIFFileTools.convertGroupToAtomSites(Group g, int model, String chainName, String chainId) Converts a Group into a List of AtomSite objects.
static List<AtomSite>	MMCIFFileTools.convertStructureToAtomSites(Structure s) Converts a Structure into a List of AtomSite objects

Methods in org.biojava.nbio.structure.io.mmcif with parameters of type AtomSite

Modifier and Type	Method and Description
void	MMcifConsumer.newAtomSite(AtomSite atom) A new AtomSite record has been read.
void	ChemCompConsumer.newAtomSite(AtomSite atom)
void	MetalBondConsumer.newAtomSite(AtomSite atom)
void	SimpleMMcifConsumer.newAtomSite(AtomSite atom)