Uses of Package
org.biojava.nbio.structure.symmetry.core

Packages that use org.biojava.nbio.structure.symmetry.core

Package	Description
org.biojava.nbio.structure.cluster
org.biojava.nbio.structure.symmetry.axis
org.biojava.nbio.structure.symmetry.core
org.biojava.nbio.structure.symmetry.jmolScript
org.biojava.nbio.structure.symmetry.utils

Classes in org.biojava.nbio.structure.symmetry.core used by org.biojava.nbio.structure.cluster

Class and Description
Stoichiometry A utility object that describes Stoichiometry (composition of a protein assembly), determined via clustering procedure SubunitClusterer, and implements human-readable representation using various strategies.

Classes in org.biojava.nbio.structure.symmetry.core used by org.biojava.nbio.structure.symmetry.axis

Class and Description
HelixLayers
QuatSymmetryResults Holds the results of quaternary symmetry perception obtained with QuatSymmetryDetector.
QuatSymmetrySubunits A bean to represent information about the set of Subunit being considered for symmetry detection.
RotationGroup

Classes in org.biojava.nbio.structure.symmetry.core used by org.biojava.nbio.structure.symmetry.core

Class and Description
Helix
HelixLayers
QuatSymmetryParameters The QuatSymmetryParameters specify the options used for the detection of quaternary symmetry in structures using the QuatSymmetryDetector.
QuatSymmetryResults Holds the results of quaternary symmetry perception obtained with QuatSymmetryDetector.
QuatSymmetryScores
QuatSymmetrySolver
QuatSymmetrySubunits A bean to represent information about the set of Subunit being considered for symmetry detection.
Rotation
RotationGroup
Stoichiometry A utility object that describes Stoichiometry (composition of a protein assembly), determined via clustering procedure SubunitClusterer, and implements human-readable representation using various strategies.
Stoichiometry.StringOverflowStrategy What to do when the number of SubunitCluster exceeds the length of the alphabet.
SymmetryPerceptionMethod Method used for symmetry perception in the QuatSymmetryDetector.

Classes in org.biojava.nbio.structure.symmetry.core used by org.biojava.nbio.structure.symmetry.jmolScript

Class and Description
RotationGroup

Classes in org.biojava.nbio.structure.symmetry.core used by org.biojava.nbio.structure.symmetry.utils

Class and Description
QuatSymmetryResults Holds the results of quaternary symmetry perception obtained with QuatSymmetryDetector.