org.biojava.nbio.structure.symmetry.internal

Class SequenceFunctionOrderDetector

java.lang.Object

org.biojava.nbio.structure.symmetry.internal.SequenceFunctionOrderDetector

All Implemented Interfaces:

OrderDetector

public class SequenceFunctionOrderDetector
extends Object
implements OrderDetector

Calls Spencer's method for determining order. This method uses the sequence alignment information to guess the order of symmetry.

Since:

4.2.0

Author:

dmyersturnbull

Constructor Summary

Constructors

Constructor and Description
SequenceFunctionOrderDetector()
SequenceFunctionOrderDetector(int maxSymmetry, float minimumMetricChange)

Method Summary

Modifier and Type	Method and Description
int	calculateOrder(AFPChain afpChain, Atom[] ca)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SequenceFunctionOrderDetector

public SequenceFunctionOrderDetector()

SequenceFunctionOrderDetector

public SequenceFunctionOrderDetector(int maxSymmetry,
                                     float minimumMetricChange)

Method Detail

calculateOrder

public int calculateOrder(AFPChain afpChain,
                          Atom[] ca)
                   throws RefinerFailedException

Specified by:

calculateOrder in interface OrderDetector

Throws:

RefinerFailedException

toString

public String toString()

Overrides:

toString in class Object