HmmerResult (biojava 5.3.0 API)

java.lang.Object
- org.biojava.nbio.ws.hmmer.HmmerResult

All Implemented Interfaces:

Serializable, Comparable<HmmerResult>
```
public class HmmerResult
extends Object
implements Comparable<HmmerResult>, Serializable
```
The results of a Hmmer search for a single sequence

Since:

3.0.3

Author:

Andreas Prlic

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor and Description

HmmerResult()

Constructors
Constructor and Description
`HmmerResult()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`int`	`compareTo(HmmerResult o)`
`String`	`getAcc()`
`Integer`	`getDcl()`
`String`	`getDesc()`
`SortedSet<HmmerDomain>`	`getDomains()`
`Float`	`getEvalue()`
`String`	`getName()`
`Integer`	`getNdom()`
`Integer`	`getNreported()`
`int`	`getOverlapLength(HmmerResult other)` Get the overlap between two HmmerResult objects
`Double`	`getPvalue()`
`Float`	`getScore()`
`void`	`setAcc(String acc)`
`void`	`setDcl(Integer dcl)`
`void`	`setDesc(String desc)`
`void`	`setDomains(SortedSet<HmmerDomain> domains)`
`void`	`setEvalue(Float evalue)`
`void`	`setName(String name)`
`void`	`setNdom(Integer ndom)`
`void`	`setNreported(Integer nreported)`
`void`	`setPvalue(Double pvalue)`
`void`	`setScore(Float score)`
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail
- HmmerResult
```
public HmmerResult()
```

Method Detail

getDomains

public SortedSet<HmmerDomain> getDomains()

setDomains

public void setDomains(SortedSet<HmmerDomain> domains)

getDesc
```
public String getDesc()
```

setDesc
```
public void setDesc(String desc)
```

getScore
```
public Float getScore()
```

setScore
```
public void setScore(Float score)
```

getEvalue
```
public Float getEvalue()
```

setEvalue
```
public void setEvalue(Float evalue)
```

getPvalue
```
public Double getPvalue()
```

setPvalue
```
public void setPvalue(Double pvalue)
```

getAcc
```
public String getAcc()
```

setAcc
```
public void setAcc(String acc)
```

getDcl
```
public Integer getDcl()
```

setDcl
```
public void setDcl(Integer dcl)
```

getName
```
public String getName()
```

setName
```
public void setName(String name)
```

getNdom
```
public Integer getNdom()
```

setNdom
```
public void setNdom(Integer ndom)
```

getNreported
```
public Integer getNreported()
```

setNreported

public void setNreported(Integer nreported)

toString
```
public String toString()
```
Overrides:

toString in class Object

compareTo
```
public int compareTo(HmmerResult o)
```
Specified by:

compareTo in interface Comparable<HmmerResult>

getOverlapLength
```
public int getOverlapLength(HmmerResult other)
```
Get the overlap between two HmmerResult objects

Parameters:

other -

Returns:

0 if no overlap, otherwise the length of the overlap

Class HmmerResult

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

HmmerResult

Method Detail

getDomains

setDomains

getDesc

setDesc

getScore

setScore

getEvalue

setEvalue

getPvalue

setPvalue

getAcc

setAcc

getDcl

setDcl

getName

setName

getNdom

setNdom

getNreported

setNreported

toString

compareTo

getOverlapLength