Package org.biojava.nbio.core.sequence.compound

Class DNACompoundSet

java.lang.Object

org.biojava.nbio.core.sequence.template.AbstractCompoundSet<C>

org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet<NucleotideCompound>

org.biojava.nbio.core.sequence.compound.DNACompoundSet

All Implemented Interfaces:

CompoundSet<NucleotideCompound>

Direct Known Subclasses:

AmbiguityDNACompoundSet, AmbiguityDNARNAHybridCompoundSet

public class DNACompoundSet
extends AbstractNucleotideCompoundSet<NucleotideCompound>

Author:

Andy Yates

Constructor Summary

Constructors

Constructor	Description
DNACompoundSet()

Method Summary

Modifier and Type	Method	Description
static DNACompoundSet	getDNACompoundSet()
NucleotideCompound	newNucleotideCompound(String base, String complement, String... equivalents)

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet

addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompoundSet

addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, isValidSequence

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DNACompoundSet

public DNACompoundSet()

Method Detail

getDNACompoundSet

public static DNACompoundSet getDNACompoundSet()

newNucleotideCompound

public NucleotideCompound newNucleotideCompound(String base,
                                                String complement,
                                                String... equivalents)

Specified by:

newNucleotideCompound in class AbstractNucleotideCompoundSet<NucleotideCompound>