Package org.biojava.nbio.core.sequence.edits

Interface Edit<C extends Compound>

  • Type Parameters:
    C - The type of compound to edit
    All Known Implementing Classes:
    Edit.AbstractEdit, Edit.Delete, Edit.Insert, Edit.Substitute
    public interface Edit<C extends Compound>
    Interface for carrying out edit operations on a Sequence. The 3 major methods of Editing are supported
    • Insertion
    • Deletion
    • Substitution
    The interface is provided so end users can use our implementations, which are implementations which attempts to create views of Sequences in an editted form not a full-realised editted Sequence, or their own.
    Author:
    ayates

    • Nested Class Summary

      Nested Classes 
      Modifier and Type Interface Description
      static class  Edit.AbstractEdit<C extends Compound>
      Abstract class which defines all edit operations as a call to discover what 5' and 3' ends of an editing Sequence should be joined together with a target Sequence.
      static class  Edit.Delete<C extends Compound>
      Implementation which allows for the deletion of bases from a Sequence
      static class  Edit.Insert<C extends Compound>
      Edit implementation which allows us to insert a base at any position in a Sequence.
      static class  Edit.Substitute<C extends Compound>
      Allows for the substitution of bases into an existing Sequence.