Package org.biojava.nbio.structure.gui.util

Some utility classes for the protein structure GUIs. Possible start classes are one level higher at org.biojava.nbio.structure.ngui.BiojavaJmol, and org.biojava.nbio.structure.gui.AlignmentGui.

Interface Summary

Interface	Description
StructurePairSelector	To be implemented by JPanels that are part of the GUI to trigger structure aligmnents.

Class Summary

Class	Description
AlignedPosition
AlignmentCalc	A class that obtains two structures via DAS and aligns them This is done in a separate thread.
AlternativeAlignmentFrame	a frame showing the alternative alignments, which are the result of a structure superimposition
CoordManager	a class that manages the conversion of sequence coordinate system to JPanel drawing coordinates
MenuCreator	Create the menu for BiojavaJmol
PDBDirPanel	A class to define where a structure for the alignment is coming from
PDBServerPanel	A class to define where a structure for the alignment is coming from
PDBUploadPanel	A JPanel to upload 2 custom PDB files.
ScopInstallationInstance
ScopSelectPanel
SelectMultiplePanel	A Text Panel that allows the user to specify multiple structure identifiers, space separated.
SequenceMouseListener	a mouse listener for the AbstractChainRenderer class it listens to all mouse events and triggeres appropriate SequenceListener and FeatureListener events
SequenceScalePanel	A class that draws a Sequence as a rectangle, a scale display over it.