Package org.biojava.nbio.ws.alignment.qblast

Enum BlastOutputAlignmentFormatEnum

java.lang.Object

java.lang.Enum<BlastOutputAlignmentFormatEnum>

org.biojava.nbio.ws.alignment.qblast.BlastOutputAlignmentFormatEnum

All Implemented Interfaces:

Serializable, Comparable<BlastOutputAlignmentFormatEnum>

public enum BlastOutputAlignmentFormatEnum
extends Enum<BlastOutputAlignmentFormatEnum>

Enum representing available output alignment types.

Values as used in QBlast URL API.

Author:

Gediminas Rimsa

Enum Constant Summary

Enum Constants

Enum Constant	Description
FlatQueryAnchored
FlatQueryAnchoredNoIdentities
Pairwise
QueryAnchored
QueryAnchoredNoIdentities
Tabular

Method Summary

Modifier and Type	Method	Description
static BlastOutputAlignmentFormatEnum	valueOf(String name)	Returns the enum constant of this type with the specified name.
static BlastOutputAlignmentFormatEnum[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

Pairwise

public static final BlastOutputAlignmentFormatEnum Pairwise

QueryAnchored

public static final BlastOutputAlignmentFormatEnum QueryAnchored

QueryAnchoredNoIdentities

public static final BlastOutputAlignmentFormatEnum QueryAnchoredNoIdentities

FlatQueryAnchored

public static final BlastOutputAlignmentFormatEnum FlatQueryAnchored

FlatQueryAnchoredNoIdentities

public static final BlastOutputAlignmentFormatEnum FlatQueryAnchoredNoIdentities

Tabular

public static final BlastOutputAlignmentFormatEnum Tabular

Method Detail

values

public static BlastOutputAlignmentFormatEnum[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (BlastOutputAlignmentFormatEnum c : BlastOutputAlignmentFormatEnum.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static BlastOutputAlignmentFormatEnum valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null