Package org.biojava.nbio.core.search.io.blast

Class BlastHspBuilder

java.lang.Object

org.biojava.nbio.core.search.io.blast.BlastHspBuilder

public class BlastHspBuilder
extends Object

Designed by Paolo Pavan. You may want to find my contacts on Github and LinkedIn for code info or discuss major changes. https://github.com/paolopavan

Author:

Paolo Pavan

Constructor Summary

Constructors

Constructor	Description
BlastHspBuilder()

Method Summary

Modifier and Type	Method	Description
org.biojava.nbio.core.search.io.blast.BlastHsp	createBlastHsp()
BlastHspBuilder	setHspAlignLen(int hspAlignLen)
BlastHspBuilder	setHspBitScore(double hspBitScore)
BlastHspBuilder	setHspEvalue(double hspEvalue)
BlastHspBuilder	setHspGaps(int hspGaps)
BlastHspBuilder	setHspHitFrame(int hspHitFrame)
BlastHspBuilder	setHspHitFrom(int hspHitFrom)
BlastHspBuilder	setHspHitTo(int hspHitTo)
BlastHspBuilder	setHspHseq(String hspHseq)
BlastHspBuilder	setHspIdentity(int hspIdentity)
BlastHspBuilder	setHspIdentityString(String hspIdentityString)
BlastHspBuilder	setHspNum(int hspNum)
BlastHspBuilder	setHspPositive(int hspPositive)
BlastHspBuilder	setHspQseq(String hspQseq)
BlastHspBuilder	setHspQueryFrame(int hspQueryFrame)
BlastHspBuilder	setHspQueryFrom(int hspQueryFrom)
BlastHspBuilder	setHspQueryTo(int hspQueryTo)
BlastHspBuilder	setHspScore(int hspScore)
BlastHspBuilder	setMismatchCount(Integer mismatchCount)
BlastHspBuilder	setPercentageIdentity(Double percentageIdentity)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlastHspBuilder

public BlastHspBuilder()

Method Detail

setHspNum

public BlastHspBuilder setHspNum(int hspNum)

setHspBitScore

public BlastHspBuilder setHspBitScore(double hspBitScore)

setHspScore

public BlastHspBuilder setHspScore(int hspScore)

setHspEvalue

public BlastHspBuilder setHspEvalue(double hspEvalue)

setHspQueryFrom

public BlastHspBuilder setHspQueryFrom(int hspQueryFrom)

setHspQueryTo

public BlastHspBuilder setHspQueryTo(int hspQueryTo)

setHspHitFrom

public BlastHspBuilder setHspHitFrom(int hspHitFrom)

setHspHitTo

public BlastHspBuilder setHspHitTo(int hspHitTo)

setHspQueryFrame

public BlastHspBuilder setHspQueryFrame(int hspQueryFrame)

setHspHitFrame

public BlastHspBuilder setHspHitFrame(int hspHitFrame)

setHspIdentity

public BlastHspBuilder setHspIdentity(int hspIdentity)

setHspPositive

public BlastHspBuilder setHspPositive(int hspPositive)

setHspGaps

public BlastHspBuilder setHspGaps(int hspGaps)

setHspAlignLen

public BlastHspBuilder setHspAlignLen(int hspAlignLen)

setHspQseq

public BlastHspBuilder setHspQseq(String hspQseq)

setHspHseq

public BlastHspBuilder setHspHseq(String hspHseq)

setHspIdentityString

public BlastHspBuilder setHspIdentityString(String hspIdentityString)

setPercentageIdentity

public BlastHspBuilder setPercentageIdentity(Double percentageIdentity)

setMismatchCount

public BlastHspBuilder setMismatchCount(Integer mismatchCount)

createBlastHsp

public org.biojava.nbio.core.search.io.blast.BlastHsp createBlastHsp()