Class BlastResultBuilder
- java.lang.Object
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- org.biojava.nbio.core.search.io.blast.BlastResultBuilder
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public class BlastResultBuilder extends Object
Designed by Paolo Pavan. You may want to find my contacts on Github and LinkedIn for code info or discuss major changes. https://github.com/paolopavan- Author:
- Paolo Pavan
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Constructor Summary
Constructors Constructor Description BlastResultBuilder()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description BlastResult
createBlastResult()
BlastResultBuilder
setDbFile(String dbFile)
BlastResultBuilder
setHits(List<Hit> hits)
BlastResultBuilder
setIterationNumber(int iterationNumber)
BlastResultBuilder
setProgram(String program)
BlastResultBuilder
setProgramSpecificParameters(HashMap<String,String> programSpecificParameters)
BlastResultBuilder
setQueryDef(String queryDef)
BlastResultBuilder
setQueryID(String queryID)
BlastResultBuilder
setQueryLength(int queryLength)
BlastResultBuilder
setQuerySequence(Sequence s)
BlastResultBuilder
setReference(String reference)
BlastResultBuilder
setVersion(String version)
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Constructor Detail
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BlastResultBuilder
public BlastResultBuilder()
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Method Detail
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setProgram
public BlastResultBuilder setProgram(String program)
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setVersion
public BlastResultBuilder setVersion(String version)
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setReference
public BlastResultBuilder setReference(String reference)
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setDbFile
public BlastResultBuilder setDbFile(String dbFile)
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setProgramSpecificParameters
public BlastResultBuilder setProgramSpecificParameters(HashMap<String,String> programSpecificParameters)
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setIterationNumber
public BlastResultBuilder setIterationNumber(int iterationNumber)
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setQueryID
public BlastResultBuilder setQueryID(String queryID)
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setQueryDef
public BlastResultBuilder setQueryDef(String queryDef)
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setQueryLength
public BlastResultBuilder setQueryLength(int queryLength)
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setHits
public BlastResultBuilder setHits(List<Hit> hits)
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setQuerySequence
public BlastResultBuilder setQuerySequence(Sequence s)
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createBlastResult
public BlastResult createBlastResult()
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