Package org.biojava.nbio.core.sequence.compound

Class AmbiguityDNARNAHybridCompoundSet

java.lang.Object

org.biojava.nbio.core.sequence.template.AbstractCompoundSet<C>

org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet<NucleotideCompound>

org.biojava.nbio.core.sequence.compound.DNACompoundSet

org.biojava.nbio.core.sequence.compound.AmbiguityDNARNAHybridCompoundSet

All Implemented Interfaces:

CompoundSet<NucleotideCompound>

public class AmbiguityDNARNAHybridCompoundSet
extends DNACompoundSet

Ambiguity set for hybrid DNA/RNA sequences. Needed for some instances of synthetic nucleotide sequences present in protein structures from the PDB.

Author:

Jose Duarte

Constructor Summary

Constructors

Constructor	Description
AmbiguityDNARNAHybridCompoundSet()

Method Summary

Modifier and Type	Method	Description
static AmbiguityDNARNAHybridCompoundSet	getDNARNAHybridCompoundSet()

Methods inherited from class org.biojava.nbio.core.sequence.compound.DNACompoundSet

getDNACompoundSet, newNucleotideCompound

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet

addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompoundSet

addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, isValidSequence

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AmbiguityDNARNAHybridCompoundSet

public AmbiguityDNARNAHybridCompoundSet()

Method Detail

getDNARNAHybridCompoundSet

public static AmbiguityDNARNAHybridCompoundSet getDNARNAHybridCompoundSet()