Package org.biojava.nbio.core.sequence.io

Class GenericGenbankHeaderFormat<S extends AbstractSequence<C>,C extends Compound>

java.lang.Object

org.biojava.nbio.core.sequence.io.GenericInsdcHeaderFormat<S,C>

org.biojava.nbio.core.sequence.io.GenericGenbankHeaderFormat<S,C>

All Implemented Interfaces:

GenbankHeaderFormatInterface<S,C>

public class GenericGenbankHeaderFormat<S extends AbstractSequence<C>,C extends Compound>
extends GenericInsdcHeaderFormat<S,C>
implements GenbankHeaderFormatInterface<S,C>

Field Summary

Fields inherited from class org.biojava.nbio.core.sequence.io.GenericInsdcHeaderFormat

MAX_WIDTH, QUALIFIER_INDENT, QUALIFIER_INDENT_STR, QUALIFIER_INDENT_TMP

Fields inherited from interface org.biojava.nbio.core.sequence.io.template.GenbankHeaderFormatInterface

UNKNOWN_DNA

Constructor Summary

Constructors

Constructor	Description
GenericGenbankHeaderFormat()
GenericGenbankHeaderFormat(boolean useOriginalHeader)
GenericGenbankHeaderFormat(String seqType)

Method Summary

Modifier and Type	Method	Description
String	getHeader(S sequence)

Methods inherited from class org.biojava.nbio.core.sequence.io.GenericInsdcHeaderFormat

_split_multi_line, _write_feature

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenericGenbankHeaderFormat

public GenericGenbankHeaderFormat()

GenericGenbankHeaderFormat

public GenericGenbankHeaderFormat(String seqType)

GenericGenbankHeaderFormat

public GenericGenbankHeaderFormat(boolean useOriginalHeader)

Method Detail

getHeader

public String getHeader(S sequence)

Specified by:

getHeader in interface GenbankHeaderFormatInterface<S extends AbstractSequence<C>,C extends Compound>