ReversedSequenceView (biojava 6.1.0 API)

java.lang.Object
- org.biojava.nbio.core.sequence.template.SequenceProxyView<C>
- - org.biojava.nbio.core.sequence.views.ReversedSequenceView<C>

Type Parameters:

C - Must be a subtype of @{link Compound}

All Implemented Interfaces:

Iterable<C>, Accessioned, Sequence<C>, SequenceView<C>
```
public class ReversedSequenceView<C extends Compound>
extends SequenceProxyView<C>
```
For a given sequence this class will return the base at the reversed position i.e. in a sequence of size 10, if you request base 2 you will get back the base at position 9. Sub-views can be made of this class which also respect the reversed calls.

Author:

Andy Yates

Constructor Summary

Constructors
Constructor Description

ReversedSequenceView(Sequence<C> sequence)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`C`	`getCompoundAt(int position)`	Returns the Compound at the given biological index
`String`	`getSequenceAsString()`	Returns the String representation of the Sequence
`protected int`	`toIndex(int index)`

Methods inherited from class org.biojava.nbio.core.sequence.template.SequenceProxyView
countCompounds, equals, getAccession, getAsList, getBioEnd, getBioStart, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSubSequence, getViewedSequence, hashCode, iterator, setBioEnd, setBioStart

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable
forEach, spliterator

- Constructor Detail
  - ReversedSequenceView
```
public ReversedSequenceView(Sequence<C> sequence)
```
- Method Detail
  - getSequenceAsString
```
public String getSequenceAsString()
```
    Description copied from interface: Sequence
    
    Returns the String representation of the Sequence
    
    Specified by:
    
    getSequenceAsString in interface Sequence<C extends Compound>
    
    Overrides:
    
    getSequenceAsString in class SequenceProxyView<C extends Compound>
  - toIndex
```
protected int toIndex(int index)
```
  - getCompoundAt
```
public C getCompoundAt(int position)
```
    Description copied from interface: Sequence
    
    Returns the Compound at the given biological index
    
    Specified by:
    
    getCompoundAt in interface Sequence<C extends Compound>
    
    Overrides:
    
    getCompoundAt in class SequenceProxyView<C extends Compound>
    
    Parameters:
    
    position - Biological index (1 to n)
    
    Returns:
    
    Compound at the specified position