Package org.biojava.nbio.structure.cath

Enum CathCategory

java.lang.Object

java.lang.Enum<CathCategory>

org.biojava.nbio.structure.cath.CathCategory

All Implemented Interfaces:

Serializable, Comparable<CathCategory>

public enum CathCategory
extends Enum<CathCategory>

The categories found within CATH. The CATH node types are: 'C' (class), 'A' (architecture), 'T' (topology), 'H' (homologous superfamily), 'S' (sequence family, S35), 'O' (orthologous sequence family, S60), 'L' ("like" sequence family, S95), 'I' (identical, S100) and 'D' (domain, S100 count).

Author:

Daniel Asarnow

Enum Constant Summary

Enum Constants

Enum Constant	Description
Architecture
Class
DomainCounter
Homology
IdenticalSequenceFamily
LikeSequenceFamily
OrthologousSequenceFamily
SequenceFamily
Topolgy

Method Summary

Modifier and Type	Method	Description
static CathCategory	fromCathCode(String code)
static CathCategory	fromString(String type)
String	toString()
static CathCategory	valueOf(String name)	Returns the enum constant of this type with the specified name.
static CathCategory[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

Class

public static final CathCategory Class

Architecture

public static final CathCategory Architecture

Topolgy

public static final CathCategory Topolgy

Homology

public static final CathCategory Homology

SequenceFamily

public static final CathCategory SequenceFamily

OrthologousSequenceFamily

public static final CathCategory OrthologousSequenceFamily

LikeSequenceFamily

public static final CathCategory LikeSequenceFamily

IdenticalSequenceFamily

public static final CathCategory IdenticalSequenceFamily

DomainCounter

public static final CathCategory DomainCounter

Method Detail

values

public static CathCategory[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (CathCategory c : CathCategory.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static CathCategory valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

fromString

public static CathCategory fromString(String type)

toString

public String toString()

Overrides:

toString in class Enum<CathCategory>

fromCathCode

public static CathCategory fromCathCode(String code)