Uses of Class
org.biojava.nbio.structure.cath.CathDomain

Packages that use CathDomain

Package	Description
org.biojava.nbio.structure.cath

Uses of CathDomain in org.biojava.nbio.structure.cath

Methods in org.biojava.nbio.structure.cath that return CathDomain

Modifier and Type	Method	Description
CathDomain	CathDatabase.getDescriptionByCathId(String cathId)	Return CATH description for CATH domain ID.
CathDomain	CathInstallation.getDescriptionByCathId(String cathId)
CathDomain	CathDatabase.getDescriptionByNodeId(String nodeId)	Return CATH description for node representative by node ID.
CathDomain	CathInstallation.getDescriptionByNodeId(String nodeId)
CathDomain	CathDatabase.getDomainByCathId(String cathId)	Return CATH domain for CATH domain ID.
CathDomain	CathInstallation.getDomainByCathId(String cathId)

Methods in org.biojava.nbio.structure.cath that return types with arguments of type CathDomain

Modifier and Type	Method	Description
List<CathDomain>	CathDatabase.filterByCathCode(String query)	Return list of CATH descriptions whose CATH codes (e.g. 1.4.6.10) start with the query.
List<CathDomain>	CathInstallation.filterByCathCode(String query)
List<CathDomain>	CathDatabase.filterByDescription(String query)	Return list of CATH descriptions whose descriptions (name field) starts with the query.
List<CathDomain>	CathInstallation.filterByDescription(String query)
List<CathDomain>	CathDatabase.filterByNodeName(String query)	Return list of CATH domains whose node name (e.g.
List<CathDomain>	CathInstallation.filterByNodeName(String query)
List<CathDomain>	CathDatabase.getByCategory(CathCategory category)	Return list of CATH descriptions for node representatives at a CATH category (e.g.
List<CathDomain>	CathInstallation.getByCategory(CathCategory category)
List<CathDomain>	CathDatabase.getDomainsByNodeId(String nodeId)	Return all CATH domains for a particular CATH node.
List<CathDomain>	CathInstallation.getDomainsByNodeId(String nodeId)
List<CathDomain>	CathDatabase.getDomainsForPdb(String pdbId)	Return all CATH domains for a PDB ID.
List<CathDomain>	CathInstallation.getDomainsForPdb(String pdbId)

Methods in org.biojava.nbio.structure.cath with parameters of type CathDomain

Modifier and Type	Method	Description
List<CathNode>	CathDatabase.getTree(CathDomain domain)	Return the CATH sub-tree for a particular domain.
List<CathNode>	CathInstallation.getTree(CathDomain domain)