Uses of Package
org.biojava.nbio.structure.contact

Packages that use org.biojava.nbio.structure.contact

Package	Description
org.biojava.nbio.structure
org.biojava.nbio.structure.align.util
org.biojava.nbio.structure.basepairs
org.biojava.nbio.structure.contact
org.biojava.nbio.structure.xtal

Classes in org.biojava.nbio.structure.contact used by org.biojava.nbio.structure

Class	Description
AtomContactSet	A set of atom-atom contacts to hold the results of intra and inter-chain contact calculations

Classes in org.biojava.nbio.structure.contact used by org.biojava.nbio.structure.align.util

Class	Description
Pair	A Pair of objects.

Classes in org.biojava.nbio.structure.contact used by org.biojava.nbio.structure.basepairs

Class	Description
Pair	A Pair of objects.

Classes in org.biojava.nbio.structure.contact used by org.biojava.nbio.structure.contact

Class	Description
AtomContact	A pair of atoms that are in contact
AtomContactSet	A set of atom-atom contacts to hold the results of intra and inter-chain contact calculations
AtomIdentifier
BoundingBox	A bounding box for short cutting some geometrical calculations.
Contact	A simple class to store contacts in the form of pairs of indices and a distance associated to them.
Grid	A grid to be used for calculating atom contacts through a spatial hashing algorithm.
GridCell	A grid cell to be used in contact calculation via spatial hashing algorithm.
GroupContact	A pair of residues that are in contact
GroupContactSet	A set of residue-residue contacts.
Pair	A Pair of objects.
StructureInterface	An interface between 2 molecules (2 sets of atoms).
StructureInterfaceCluster
StructureInterfaceList	A list of interfaces between 2 molecules (2 sets of atoms)

Classes in org.biojava.nbio.structure.contact used by org.biojava.nbio.structure.xtal

Class	Description
BoundingBox	A bounding box for short cutting some geometrical calculations.
StructureInterfaceList	A list of interfaces between 2 molecules (2 sets of atoms)